Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq315 120 3e-22 seq54 116 4e-21 seq104 113 4e-20 seq13 113 4e-20 seq521 89.7 5e-13 >seq315 Length=31375 Score = 120 bits (132), Expect = 3e-22 Identities = 1096/1745 (63%), Gaps = 62/1745 (4%) Strand=Plus/Plus Query 145852 TTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCATGTCTAT--CATGC 145909 || || || ||| ||| || || || | | | || ||||||||||| | || |||| Sbjct 24272 TTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCGGCCATCTGGATAACATG- 24330 Query 145910 ACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGT--GCTGGGGTATTTC 145967 || ||| ||| ||||| | || ||| ||||| |||||| || || ||| |||| Sbjct 24331 ACGCTGAGA-AATCTCCCAAACAGTCTTATAGAGAGCCTTGATGTCGGCGGGGATATTGG 24389 Query 145968 GTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTA 146027 | |||||||| | || ||||| ||||| | || ||| || | || | Sbjct 24390 GG--ATGTTCTGAATGGAACCATTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACCA 24447 Query 146028 AATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGC 146087 | || ||| ||||| |||||| ||| | ||||||| ||||| || || || || Sbjct 24448 GAGACCCATGTCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAGC 24507 Query 146088 GAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAG 146147 | || || | | | || | |||| ||| | ||||| || |||| |||||||| || Sbjct 24508 CAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCAG 24567 Query 146148 TATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 || |||| |||| ||||| |||||| || | |||||| ||||| | | ||||| Sbjct 24568 AATTTGCGAGGTCGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTG 24627 Query 146208 -TCTTTGAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATAT 146266 || |||| ||| ||| || ||| ||| | ||| || | | | || | || || Sbjct 24628 CTCCTTGA-TCTGCTCCTTCAGATTGTCCCACTCCCATAACTCA---GAAGGCTTGACAT 24683 Query 146267 TGTAGTTGTCGTAATGCATAGTGCCG-CGGAACAGGGGGCTATTCTCGTACGATTCATAA 146325 | | ||||| | || | | | || | || ||| | || | | | || Sbjct 24684 TCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCC-CTTGAAGGTAGAGTAG 24742 Query 146326 GGACCGTCGATCTT-GGCCAGTTCGCAGCTAG-CTTCCAGAGCCGAAAAGTATATGGTCT 146383 || || | | |||| |||||| || || || || ||| || | ||| ||||||| Sbjct 24743 GGGCCTT-GCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAGTGCAGCGTGGTAGATGGTCT 24800 Query 146384 CCGCGATCATGTAGTTGACGCTC-CTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGC 146442 | |||| | ||||| |||| | |||||| ||| |||| || ||| Sbjct 24801 CGAAGATCTGCTTGTTGA-GCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAGAGCA 24859 Query 146443 ACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTG 146502 | ||| ||||| || |||||||| | || ||||| | ||| || ||| | |||| ||| Sbjct 24860 AGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTG 24919 Query 146503 TTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACG 146562 || ||| || || |||| || |||||| || |||||||||||||| ||||| ||| Sbjct 24920 TTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTTACGGACG 24979 Query 146563 ACAATTTTCGTCAAACGATTCAGCAGGACATAGTC--AAATGTTTTAGTTTTAACGTTGA 146620 || | || || | | ||| | |||| | | || || || || || Sbjct 24980 ACCACTTGAGTGACCTCGTGGAGCTTCTGAAAGTCGTAGCGGCCTTCTTTGTA--GTCGA 25037 Query 146621 CGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAAT 146680 || | | ||| | |||||||||||| || || ||| ||| || | | || | Sbjct 25038 CGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGT 25097 Query 146681 ACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTAC 146740 ||| | ||||| | ||| |||||| || ||| | |||| || || ||||| | Sbjct 25098 ACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGC 25157 Query 146741 TAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCT 146800 | ||||||||| |||||||| ||||| | || || |||||| | || || Sbjct 25158 TCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACT 25217 Query 146801 CGACGAT-GAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTACA-GTTTATTCT 146857 ||| ||| || | | || | | ||||| | | | ||||| || || | | Sbjct 25218 CGAGGATCGAGT---ACCAGAGCTTCTGGGCACGAATAGTCTTGCGGCCACGGCCCTCAC 25274 Query 146858 TTTCGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGAGGCCGGG 146915 || || || ||||| | ||||| || | || || || ||||| || Sbjct 25275 GCTCATACTTTTCGTAGAGAGCCTCAAATTCCTCG--CCATAGCAATCAGCCAGGCCAGG 25332 Query 146916 ATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAA 146975 ||| |||||||| | || | ||| || |||| | ||||| | ||| || | Sbjct 25333 GCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAG 25392 Query 146976 ATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTT 147035 ||| || ||||| || | || | | ||||||||| | || || || ||| Sbjct 25393 ATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTACCGTGGTT 25452 Query 147036 GCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAG 147095 || ||| | || | ||| | | || | ||||||||||| | ||| ||| | Sbjct 25453 CTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAA 25512 Query 147096 TGCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCG 147152 ||| || |||| ||||||||||| || |||| | | |||| |||||||| || Sbjct 25513 TGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCG 25572 Query 147153 TAACATGGACACGAGGCCGCCGGATTT---TGTGGTGCCG---TTGTA------TTGAGC 147200 | ||||| | || |||| |||| | |||||||| |||| ||| Sbjct 25573 GAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGC 25632 Query 147201 GCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGA-CT 147259 | || || || ||| ||| |||| || || ||| || || |||| || | | Sbjct 25633 ACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCATGGCACAGGT 25692 Query 147260 CGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACG 147319 | || | || | |||||| ||||| |||||||| ||||| ||| |||||||| | Sbjct 25693 CTTG-AGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGG 25751 Query 147320 AACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAA-- 147377 || ||| || | || || || || || || || |||||| ||||| Sbjct 25752 AAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAAA 25811 Query 147378 -CGTGCCCAGACTCATCAATTGATACGTTTC--AATGGCGCTCATAACGTCATCGCCGTG 147434 | || | || ||| | || || || || || |||||| || || || || Sbjct 25812 GCTTG-CTGGA--CATGAGGTGGTAGGTCTCCAAAACGCGCTC--AATGTTGTCTCCCCA 25866 Query 147435 AATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGAC 147494 ||| | | || |||||||| | |||||||||||| || || ||||| | | |||| Sbjct 25867 AATACCGACCGCAACGCGCATAATCATGTGCTGGGGCCGCTCGACAATCTTGCCGTTGAG 25926 Query 147495 TTTTAATAGATATCCATTGGTCAGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCT 147554 ||| | |||||| | |||||| ||||| |||||||| | |||| | |||| || Sbjct 25927 TTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAGTCTCT 25986 Query 147555 GTTGT 147559 || || Sbjct 25987 GTCGT 25991 >seq54 Length=115083 Score = 116 bits (128), Expect = 4e-21 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||| ||||| ||| || || ||| || || ||||| || |||||| ||||| Sbjct 30706 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 30765 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 ||||||||||| || || || |||||||||||||| |||||| ||||| | ||| Sbjct 30766 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 30825 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| |||||| || | ||| | || ||||| |||||||| || || ||| Sbjct 30826 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAAA 30885 Query 127106 ATCTGCATGGCTTATT 127121 ||| |||| |||| Sbjct 30886 --CTGGATGGTGTATT 30899 >seq104 Length=76965 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | || ||| || || || ||||| |||| | Sbjct 66901 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 66842 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || ||||| |||| | ||| ||||| || || || Sbjct 66841 AGGGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGA 66782 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | | ||| || Sbjct 66781 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 66722 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || || || || ||||| || ||||||||||| Sbjct 66721 TCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 66675 >seq13 Length=187677 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||||| | |||||||| || ||||||||||| ||| | Sbjct 68190 CCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 68131 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || ||||| |||| | ||||||||| || || || Sbjct 68130 AAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 68071 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| |||||||| || || ||| | | |||| || |||| | |||||| Sbjct 68070 ATGCCTTCCTTGTCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACT 68011 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| |||| ||| || || || |||||||| Sbjct 68010 TCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 67964 Score = 98.7 bits (108), Expect = 9e-16 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || |||||||| ||| | || ||| ||| || ||||| || ||| Sbjct 67932 GTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGACCATCTTCCAGCTGCTTACCA 67873 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||||||||||||||| ||||| || || ||||| ||| || ||| ||| Sbjct 67872 GCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCGATTTG 67813 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| || | ||| | || || || |||| ||| Sbjct 67812 ACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCAGTCAAAGTC 67753 Query 127097 TTTACAA 127103 || |||| Sbjct 67752 TTGACAA 67746 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| || || ||||| |||||| Sbjct 67631 GTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCAAGCTGCTTTCCA 67572 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| || || || || |||||||||||| || ||| |||| Sbjct 67571 GCGAAGATCAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGAATCTTCGACTTG 67512 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| || | |||||| |||| || | || |||||||| || || Sbjct 67511 ACATTGTCAATGGTATCAGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTC 67452 Query 127097 TTTACAAAAATCTGCATG 127114 || || || || |||||| Sbjct 67451 TTGACGAAGATTTGCATG 67434 >seq521 Length=16305 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 47353 CCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGG 47412 |||| || || | ||| ||| |||||| | ||||||||||||| || | | | Sbjct 13722 CCGACGCTGTTGGCATCGAGCAAGAGTTTCTGACCGAGGCTCTGCCGTGTGCTCTCCTAG 13781 Query 47413 GAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTC 47472 | |||||||| | |||| | || || |||||||||||||| ||||| | ||| Sbjct 13782 GCATGAACGCCACACTAATGAAGCAATATATTGAATTTGTCGCCGATCGCCTATTGGTTG 13841 Query 47473 AGCTAAAGTATCCCAA-GATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATT 47531 || ||| | || | | ||| | |||| || || ||||| || ||| | |||||| Sbjct 13842 CTCTTG-GTAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATT 13900 Query 47532 TCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATATAAA 47582 || | | || ||||| ||||| ||||||||||| || || |||||| || Sbjct 13901 TCCTTGGGTGGTAAGACAAACTTCTTCGAGAAGCGAGTTGGAGAATATCAA 13951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475488353766560