Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq315 288 1e-72 seq521 107 2e-18 seq311 96.9 4e-15 >seq315 Length=31375 Score = 288 bits (318), Expect = 1e-72 Identities = 1141/1773 (64%), Gaps = 37/1773 (2%) Strand=Plus/Plus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||| |||||| || |||| | || | ||||||||| ||||||||||| | Sbjct 24147 TGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGAC 24206 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 || ||||||| || | ||||| |||| | |||| | || ||| | |||| Sbjct 24207 CCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGT 24266 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 | ||| | ||||| || ||||| ||| || ||||| || ||||| | || | Sbjct 24267 GAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCGGCCATCTGGATAA 24326 Query 115706 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 115765 ||| | || ||||| ||||| | ||||| ||| || || | ||||||| Sbjct 24327 CATGACGCTGAGAAATCTCCCAAACAGTCTTATAGAGAGCCTTGATGTCGGCGGGGATAT 24386 Query 115766 CCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATATCCTTTG 115822 ||| || || || || ||| || | | |||| | | |||||| | | | Sbjct 24387 TGGGGATGTTCTGAATGGAACCATT---CTCGGCAATGATGCGGTTCTTCATGGCATCAG 24443 Query 115823 ACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCAC 115882 |||||||||| || | |||||||| | ||| ||||| || || |||| Sbjct 24444 ACCAGAGACCCATGTCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCAC 24503 Query 115883 CCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942 | || | | || | | | || ||||||| ||||||||||||||||||||||||||||| Sbjct 24504 CAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTAC 24563 Query 115943 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGAC 116002 ||| ||||| | || ||||| ||||||||||| || | || | |||||| | || Sbjct 24564 CCAGAATTTGCGAGGTCGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATAC 24623 Query 116003 CCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCG--TAGTTGAGCTTTGTCTCCCC 116060 | | || | || | ||||| || |||||| || || | || | || | Sbjct 24624 CGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCATAACTCAGAA--GGCTTGAC 24681 Query 116061 CTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 116120 | |||||| || || || || ||||||| || || || || |||| || || || Sbjct 24682 ATTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGAGTA 24741 Query 116121 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG-AGGGCTGCGTGATACATTGTCT 116179 ||||| | | | |||| || || | || || || ||||| || || |||| Sbjct 24742 GGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAGTGCAGCGTGGTAGATGGTCT 24800 Query 116180 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAA-A 116238 | || || | || | | ||||||| || || || | | || || | | Sbjct 24801 CGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCG-CAGAGCA 24859 Query 116239 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 116298 | ||| | || || ||||| || ||||| | || || || ||||||| ||| || Sbjct 24860 AGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTG 24919 Query 116299 TTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 116358 || ||||| ||| | ||| ||| || ||| || | | | || || || | | Sbjct 24920 TTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTTACGGACG 24979 Query 116359 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT-GAC 116417 || || | |||| || || ||||| | | || | | || ||| | | | ||| Sbjct 24980 ACCACTTGAGTGACCTCGTGGAGCTTCTGAAAGTCGTAGCGGCCT-TCTTTGTAGTCGAC 25038 Query 116418 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 116477 | ||| ||||| | || |||| || || |||| |||||| || ||| Sbjct 25039 GAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTA 25098 Query 116478 CTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 116537 ||| || || ||||| |||| || || || |||||| |||| |||||| || || Sbjct 25099 CTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCT 25158 Query 116538 CTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTT 116597 |||| |||| || ||||||||||| |||||| | || | ||||| || || ||||||| Sbjct 25159 CTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTC 25218 Query 116598 GAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCT 116656 ||| || | | ||| | | || | ||| | | ||| | | | || ||||| || Sbjct 25219 GAGGATCGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCGGCCACGGCCCTCACGCT 25277 Query 116657 CGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCC 116715 | |||||| |||||| |||||||| || || ||| ||| || | || || || | Sbjct 25278 CATACTTTTCGTAGAGAGCCTCAAATTCCTC-GCCATAGCAATCAGCCAGGCCAGGGCAC 25336 Query 116716 TTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 116775 | | ||||| | ||| | ||| | || || || || |||||||||||||| ||| Sbjct 25337 TCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCT 25396 Query 116776 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 116835 |||||||| || || |||||| || ||| || |||||| | || || || Sbjct 25397 GGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTACCGTGGTTCTTT 25456 Query 116836 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-A 116894 ||||| || | |||||| | | || |||||||| || || ||||| | || | || | Sbjct 25457 CGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCA 25516 Query 116895 C-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGA 116949 | | |||| ||| |||||| || || || || || ||| || ||||| Sbjct 25517 CCAGGTCGCTTG---TTACCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGG 25573 Query 116950 AGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCT 117009 ||||| |||||||| || | ||| || || || || ||| ||| | | || Sbjct 25574 AGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCA 25633 Query 117010 CTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCC 117069 | || ||||| || || || || || || ||| ||| ||||| || || | Sbjct 25634 CGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCATGGCACAGGTC 25693 Query 117070 GTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTC 117129 ||||| || ||||||| || || || ||| |||| | ||| ||||| ||| Sbjct 25694 TTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAA 25753 Query 117130 GACATTTGTGGCCTT--GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA 117187 |||| || | || || ||||||||||||||||| || |||| |||||| ||| | Sbjct 25754 GACA--GCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA--A 25809 Query 117188 TACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAAT 117245 | |||| |||||| | |||||||||||| || ||||| || || ||| Sbjct 25810 AAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATGTTGTCTCCCCAAAT 25869 Query 117246 ACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 ||||| | || ||||||| ||||| ||||| Sbjct 25870 ACCGACCGCAACGCGCATAATCATGTGCTGGGG 25902 >seq521 Length=16305 Score = 107 bits (118), Expect = 2e-18 Identities = 160/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| ||| ||| | |||||| ||||||||||| ||||| || |||||| || || Sbjct 13659 GCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGGCCG 13600 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| ||||| |||||||| | ||||||||||| ||| | || ||||||||| Sbjct 13599 GGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGATG 13540 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGA--CTTTGT-ATCA 127696 ||||||||| ||||| || | | |||| ||| | ||| ||| | |||| | | Sbjct 13539 CCCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGC---GAAGCTGGAATCCTTGTCCTGA 13483 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGAC 127740 | ||| || ||||| | ||| ||||| ||| || ||||| Sbjct 13482 ATCCAACGAATGGCCCAGTCTGCTTTTTTTCGGATGCAGGGGAC 13439 >seq311 Length=31549 Score = 96.9 bits (106), Expect = 4e-15 Identities = 227/334 (68%), Gaps = 14/334 (4%) Strand=Plus/Minus Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGG----TTGATTTTCACGGGCAA 12930 ||| | ||| || | |||||| ||||||| ||| | || ||| ||| |||| Sbjct 7456 ACCAATGGCATCCAGTTCGTCGATGAAAATGATGGAAGGCGACTTGGCTTT----GGCAG 7401 Query 12931 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 12990 | ||||| ||||| |||| ||||||||| ||||| ||||| || || | || || Sbjct 7400 CACTAAAGAGCTCTCGGACTCGCTTGGCACCTACACCGACAAAGATTTCGTCGAA-TTCA 7342 Query 12991 CGGCGGAACAT-TGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGG 13049 | | | |||| | || |||||| ||| | |||||| || | |||||| || || || Sbjct 7341 CTACCGGACATGTAGAAGAAGGGCACGCCAGCTTCACCGGCCACGGCTCGCGCAAGTAGA 7282 Query 13050 GTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGG-ATCCTGGCA-CCAC 13107 ||||||||||| ||||| ||| | ||||| |||| | |||| | | ||||| ||| Sbjct 7281 GTCTTCCCCGTTCCTGGAGGCCCAACCAGAAGAACACC-CTTGGGCAACTTGGCACCCAA 7223 Query 13108 TTCCAAAGTAGCGCTCGGGTTGTTTAAGAAAGTCCACGATTTCTTCCAATTCATCCTTCG 13167 || || || ||||| | || ||||| || || | ||||| | || ||||| | Sbjct 7222 GTCGGAA-AAGTTTTCGGGGTTCTTGAGAAACTCAACCACTTCTTGTAGCTCTTCCTTGG 7164 Query 13168 CGGCGTCGATGCCTTCAACGTCACTGAAGCGTGT 13201 | | || ||| | ||||| ||||| || || Sbjct 7163 CCTCATCACAGCCATGCACGTCGCTGAATCGGGT 7130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613491141449040