Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq315 116 6e-21 >seq315 Length=31375 Score = 116 bits (128), Expect = 6e-21 Identities = 443/679 (65%), Gaps = 16/679 (2%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATGCCGG 203900 || || |||||||| |||| || || | |||| ||||| | | || ||||||||||| | Sbjct 24140 TCTACGGTGAACTGGATGG-GTGCAGCAGCAG-CCTGCGTGCGCAAGTAGTACATGCCCG 24197 Query 203901 TCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960 |||| || ||| || ||| || | |||||| || | | |||| || | || | Sbjct 24198 TCTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGAT 24257 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCC 204019 | |||||||| ||| || |||||| |||||||| |||||| || ||||| |||||| Sbjct 24258 CCTTCATGTGAACGTTGAGCGACTGGGACTGGTCGAT-AAAGGCACCGCGATCGGCGGCC 24316 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT 204079 || | ||||| ||| ||||||||||| || ||||| | | | || ||| Sbjct 24317 ATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTATAGAGAGCCTTGATGTCG 24376 Query 204080 TGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGT 204138 || | || | | || ||| || || || || ||||| || | | || || | Sbjct 24377 GCGGGGATAT-TGGGGATGTTCTGAATGGAACCATTCTCGGCAATGATGCGGTTCTTCAT 24435 Query 204139 CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198 | || ||| | |||| || || ||| | || |||||||| || ||| Sbjct 24436 GGCATCAGACCAGAGACCCATGTCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTG 24495 Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258 || || || | || || | || | | | |||| ||| |||| || || ||| Sbjct 24496 GAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTC 24555 Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTT 204318 ||||| || | ||| || | ||| ||| |||||||||||||| || |||| ||||| Sbjct 24556 ATTGTTACCCAGAATTTGCGAGGTCGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTT 24615 Query 204319 GCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATCGCACTGG 204377 ||| | ||||| | | || |||| ||||||| | ||| || | | || | Sbjct 24616 GCGAATACCGTGCTCCTTGA-TCTGCTCCTTCAGATTGTCCCACTCCCATAACTCAGAAG 24674 Query 204378 GTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACG 204437 | || || |||||||||||| |||| || |||| | | || ||||||| | | Sbjct 24675 GCTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGG 24734 Query 204438 TCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCA-TG--GCGTGATAGT 204494 | | || || | ||||| ||||||| ||||| | || || ||||| || Sbjct 24735 TAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTCAGTGCAGCGTG---GT 24791 Query 204495 ACATGGTCTCAAAGATCTG 204513 | |||||||| |||||||| Sbjct 24792 AGATGGTCTCGAAGATCTG 24810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795134386812640