Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq521 179 4e-40 seq104 127 2e-24 seq54 105 7e-18 seq13 105 7e-18 >seq521 Length=16305 Score = 179 bits (198), Expect = 4e-40 Identities = 369/536 (69%), Gaps = 22/536 (4%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| |||||| ||||||||||| || || ||||| || || || || || || | Sbjct 13966 CATAACGCCAGCCTTTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTACCACC 13907 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTG--GTGCCG 132708 |||||||||| | ||| ||||| ||||||||||| || ||||| ||| || | Sbjct 13906 CAAGGAAATGTTCTCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACC 13847 Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCA 132767 | || | || | || | ||||| || || || || |||||| ||| || | || Sbjct 13846 AAGAG--CAACCAATAGGCGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCG 13789 Query 132768 ATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 | | | || || ||| |||| |||||| || ||||| ||||| |||||||||| | | Sbjct 13788 TTCATG-CCTAGGAGA-GCACACGGCAGAGCCTCGGTCAGAAACTCTTGCTCGATGCCAA 13731 Query 132827 CCGCGTCGGTGACGATTTCCC---TAACGCGC--GCCGCGCTCGGCCGTTGCACCAAATG 132881 | |||||||||| ||| ||| ||| || || | |||||| ||| | ||| Sbjct 13730 CAGCGTCGGTGATGATATCCTGGATAATTTGCTTGCTG-GCTCGG----TGCTTAAGATG 13676 Query 132882 CTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTT 132941 | | || || || |||||||| ||||| ||||| || | ||| || |||||||| Sbjct 13675 CGAGTGCAACAGACATGCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTT 13616 Query 132942 GCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACT 133001 ||| || | ||||||||| || || || || |||||||| || || | ||| || Sbjct 13615 AGAGAAGGTGAGGCCGGGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGC 13556 Query 133002 GCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC 133061 || ||||||| |||||| || || ||||||||||||| ||||| | |||| ||| Sbjct 13555 ACCGCTGAAGAAGATGCCCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGGA 13496 Query 133062 TTCTTTG--CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 || ||| ||| ||||| || | ||||| || || |||| | || ||| || Sbjct 13495 ATCCTTGTCCTG--AATCCAACGAATGGCCCAGTCTGCTTTTTTTCGGATGCAGGG 13442 Score = 122 bits (134), Expect = 9e-23 Identities = 193/276 (70%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||| | || || ||| || || |||| ||||| | |||||||| ||| ||||| Sbjct 13333 GTAGCTATCAATCAGGAGAGAGTATGTTTCAGAGTGAATATTCTCCATCATGATCTGAAA 13274 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 || || ||||| || ||||| ||||| || || ||||||||| | ||| || Sbjct 13273 TCCATAGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCAAGCAGGTT 13214 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||| ||||| |||||||| || || || || |||| | ||| |||||| | Sbjct 13213 TTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAGATGAAGTATTT 13154 Query 133347 CTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| |||| ||| || | ||| ||| || |||||||||||| || | |||||| Sbjct 13153 CTCGTCGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCCTTGGACAGATCGATCTCCTC 13094 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| || || || ||||| || |||||||| Sbjct 13093 GGCCGTCCAGAAAGAGGCTTCGGCCTTCTTGTACAT 13058 >seq104 Length=76965 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| |||||||| || || |||||| | || || ||| | Sbjct 66672 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCT 66731 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | | || || |||| ||||| ||||| |||||| | ||| Sbjct 66732 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 66791 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || || || | || || || ||||| || || | || ||||| | ||||||| Sbjct 66792 CAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACCCTGAGCGACTAC 66851 Query 38421 AACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| ||| || ||||| ||||||||||| Sbjct 66852 AACATCCAGAAGGAGAGC-ACCCTGCACTTGGTGCTGCG 66889 >seq54 Length=115083 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || | |||| | Sbjct 30884 TTCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGATC 30825 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || ||||||| ||||| ||||| |||||| | ||||| ||||| | Sbjct 30824 GACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATTG 30765 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || |||| || ||||| |||||||||||| || ||| Sbjct 30764 ATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAAG 30705 Query 38433 G 38433 | Sbjct 30704 G 30704 >seq13 Length=187677 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| |||||||| |||| |||||| | | Sbjct 67435 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCT 67494 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || || | ||||| |||||||| ||| | ||||| Sbjct 67495 GATACCATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATCCCCCCTGACCAG 67554 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || |||| ||||| || ||||||||| Sbjct 67555 CAGCGTCTGATCTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACTCTTTCTGACTACAAC 67614 Query 38424 ATCCAAAAGGA 38434 ||||| ||||| Sbjct 67615 ATCCAGAAGGA 67625 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || || || || |||||| | || ||||| | | Sbjct 68192 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTTCT 68251 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | ||| || || | || || |||||||| || ||||||| Sbjct 68252 GATACCATCGACAATGTCAAATCCAAGATTCAGGATAAGGAGGGAATCCCTCCCGACCAG 68311 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| || || || |||||||| |||| ||||| || | |||||||||| Sbjct 68312 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACACTGAGCGACTACAAC 68371 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| || ||||| | ||||| ||| || | || || Sbjct 68372 ATCCAGAAGGAAAGCACTTTGCATCTCGTGCTTCGTCTGCGTGGTGG 68418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500159707976960