Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq65 127 2e-23 >seq65 Length=104434 Score = 127 bits (140), Expect = 2e-23 Identities = 449/694 (65%), Gaps = 13/694 (2%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 || ||| | |||| |||||| | |||||||||||||| | |||||| || |||||||| Sbjct 75529 TTTTCAACAGCAGACACATTCATGATACCATTGGCATCGAGATCAAAGGTAACTTCAATC 75470 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTA--T 517367 ||||| || || | |||| || || || || | | ||| | |||| ||| | Sbjct 75469 TGAGGAACGCCACGGGGAGCGGGGGGAATGCCAGTAAGCTCAAACTTGCCCA--TTAGGT 75412 Query 517368 TATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGAT 517427 | || || || ||| | ||| || ||||| || | || || || ||| || | Sbjct 75411 TGTTGTCCTTGGTGCGCTGTCGCTCGCCCTCAAAGACCTGAATGAGCACCCCAGGCTGGT 75352 Query 517428 TATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAA 517487 | || ||| | || | || || || || || ||||| |||||||| | || Sbjct 75351 TGTCAGAAAAGGTCGAGAAAACCTCAGACTTCTTGGTTGGAATGGTTGTGTTACGGGGAA 75292 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 | | || ||||| || ||||| || || || | ||| ||||| | ||| | ||| |||| Sbjct 75291 TGAGCTTCGTCATCATTCCACCGGCGGTCTCAATACCCAGAGACAAAGGCGCGACGTCAA 75232 Query 517548 CTAGGACAATATTTTGA-AGT----TTTTCATCAGTTTGACCAACAAGAATAGCTGCTTG 517602 | |||| |||| | ||| || | ||| | |||| || ||||| || || Sbjct 75231 GCA--ACAAGATTTCGTTAGTAGACTTGGAAGAAGTGTCACCAGACAGGATAGCAGCCTG 75174 Query 517603 AATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACC 517662 | ||| ||||| |||||||||||||||||||| || | || | || | | ||| || Sbjct 75173 GACAGCGGCACCGTATGCAACAGCTTCATCAGGGTTGATAGACTTGTTGGGCTCTTTGCC 75114 Query 517663 ATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTA 517721 ||||| | | || | |||| ||| | ||||| || | || || ||||| | Sbjct 75113 GTTGAAGTAGTCGGAGATGAGTT-TCTGGATTCGGGGAATTCGGGTGGAACCACCAACCA 75055 Query 517722 ATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGG 517781 | ||||| ||||| || || ||||| || | || | || | ||| || || | Sbjct 75054 AGACAATCTCATGAACTTGAGATTTGTCAATCTTGGCGTCAGTGAGAACACGGTCGACAG 74995 Query 517782 GTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAG 517841 | | | | | || | || ||||| |||||||| || | |||| || Sbjct 74994 GCTGGATGGTGGAGCGGAAAAGATCCTGGCAAAGCTCTTCGAAACGGGCCCGGGTAATAG 74935 Query 517842 TGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAG 517901 | | |||| || || ||||| | |||||||| ||||||||||| |||| | || Sbjct 74934 GGGTGTAGAAATCGATACCCTCGAATAGAGAATCAATCTCAATCGTAGTCTGAGCTGCAG 74875 Query 517902 AAGATAGTGCACGTTTAGCACGTTCACATGCTGT 517935 |||| || || || |||||||| || || || Sbjct 74874 AAGAGAGGATGCGCTTGGCACGTTCGCAAGCAGT 74841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780718488822364