Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq65 185 1e-41 seq214 136 5e-27 >seq65 Length=104434 Score = 185 bits (204), Expect = 1e-41 Identities = 534/821 (65%), Gaps = 3/821 (0%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || ||||| || || || | ||| || ||||||||||| ||| Sbjct 75640 TCATCCTCCTCCTTGTACTTCTCGGCTTCCGACAGCATGCGCTCGATGTCTTCTTTGGAT 75581 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || || || |||||| | ||||||||| | | |||| || || Sbjct 75580 AGACGACCCTTGTCGTTGGTGATGACAATCTTGTTGGATTTACCGGTGCCCTTTTCAACA 75521 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| ||||||| |||||||| ||||| | ||| || | || | ||| || || Sbjct 75520 GCAGACACATTCATGATACCATTGGCATCGAGATCAAAGGTAACTTCAATCTGAGGAACG 75461 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || |||| ||||| || || | ||||| | || | || |||| ||| | Sbjct 75460 CCACGGGGAGCGGGGGGAATGCCAGTAAGCTCAAACTTGCCCATTAGGTTGTTGTCCTTG 75401 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | || || || || ||| |||| | ||| |||| |||| || || || Sbjct 75400 GTGCGCTGTCGCTCGCCCTCAAAGACCTGAATGAGCACCCCAGGCTGGTTGTCAGAAAAG 75341 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||| | | ||||| | |||||| || || || | ||||| | | ||| Sbjct 75340 GTCGAGAAAACCTCAGACTTCTTGGTTGGAATGGTTGTGTTACGGGGAATGAGCTTCGTC 75281 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || || ||||| || || | || ||||||| ||| | ||||| | | || | Sbjct 75280 ATCATTCCACCGGCGGTCTCAATACCCAGAGACAAAGGCGCGACGTCAAGCAACAAGATT 75221 Query 6989 TCTTGAACAGATTCG---TTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || | | ||| | | ||||| | | ||| || || ||||| | || ||| Sbjct 75220 TCGTTAGTAGACTTGGAAGAAGTGTCACCAGACAGGATAGCAGCCTGGACAGCGGCACCG 75161 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 ||||| || || ||||| ||||| || | || || | ||||| ||||| || || || Sbjct 75160 TATGCAACAGCTTCATCAGGGTTGATAGACTTGTTGGGCTCTTTGCCGTTGAAGTAGTCG 75101 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || | | || || ||| || ||||| || || ||||| ||||| || || |||| Sbjct 75100 GAGATGAGTTTCTGGATTCGGGGAATTCGGGTGGAACCACCAACCAAGACAATCTCATGA 75041 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 |||| ||||| || ||||| | ||| || |||||||| | || Sbjct 75040 ACTTGAGATTTGTCAATCTTGGCGTCAGTGAGAACACGGTCGACAGGCTGGATGGTGGAG 74981 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | ||| || || || || ||||| || |||||||| | || |||||||| Sbjct 74980 CGGAAAAGATCCTGGCAAAGCTCTTCGAAACGGGCCCGGGTAATAGGGGTGTAGAAATCG 74921 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 | || ||| ||| |||||||| ||||| || || || || | ||||| | | ||| Sbjct 74920 ATACCCTCGAATAGAGAATCAATCTCAATCGTAGTCTGAGCTGCAGAAGAGAGGATGCGC 74861 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACG 7386 || || || || || || || || | |||||| ||||| || Sbjct 74860 TTGGCACGTTCGCAAGCAGTACGGAGACGACGCAGGGCGCG 74820 Score = 172 bits (190), Expect = 7e-38 Identities = 488/742 (66%), Gaps = 16/742 (2%) Strand=Plus/Minus Query 7406 TTCTTATGTTTACGTTTAAACTC-TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATC 7464 ||||||||||| ||||| || || || | | ||||| || || | |||||| || Sbjct 74745 TTCTTATGTTTGCGTTTGAATTCGTTGACA-AAGTGGTTAACAAGGCGGTTATCGAAGTC 74687 Query 7465 TTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAAT 7524 |||||||||||||| || || || ||||| | ||||| || |||||||| | ||||| Sbjct 74686 CTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACCTCGAAGATACCCTCCTCAAT 74627 Query 7525 GTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT---CGT 7581 | | | || ||||| || ||||| ||||| || || ||||| | || || | Sbjct 74626 TGTGAGAAGAGACACATCGAAGGTACCGCCACCTAGATCGAAAATCAAGACATTGCGCTC 74567 Query 7582 ATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641 | | ||| || ||||| |||||||| || || || || || || || || || || || Sbjct 74566 ACCCTCGACT---TTCTTGTCGAGACCATAAGCAATGGCGGCGGCAGTAGGCTCGTTGAT 74510 Query 7642 AATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGA 7701 |||||||| ||| || || |||||| | || || || || || || || || || Sbjct 74509 GATACGAAGGACGTTGAGTCCGGCAATACGACCGGCGTCCTTGGTAGCCTGCCGCTGAGA 74450 Query 7702 ATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGA-CTTTCTTACCGAGATACG 7760 ||||| |||||||| ||||| || ||||| |||| | || | | | || ||| | Sbjct 74449 GTCGTTGAAGTAGGCGGGGACAGTGACGACAGCGTTTGGGACCGGTGTGCCCAAGA-AGC 74391 Query 7761 ATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACT 7820 || || || || ||| ||| | || | ||| || || || ||||||| | || | Sbjct 74390 CCTCGGCAATCTCGCGCATCTTGATGAGGATCATGGAAGATATTTCTTCAGGTGTGAATT 74331 Query 7821 GTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAA 7880 ||| ||| || || || || || | | || ||||| | | || | Sbjct 74330 CCTTCTCTTCCCCTTTGAATTCGACCTTGACCAAAGGTTTGCCTTGTTTTTC---AATCA 74274 Query 7881 CCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGA 7940 |||| | | | | |||||||| | ||||||| | ||| ||||| | || | Sbjct 74273 CCTTGAAGGGAAAGTGCTTCATATCAGCCTGGACCTCCGGATCCTCGAACTTGCGGCCAA 74214 Query 7941 TAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCG 8000 | | ||| || || || || || ||||| | |||||||| || || ||||| || | Sbjct 74213 TCAAACGTTTGGCGTCGAAGACGGTGTTGTGAGGGTTCATAGCGACCTGATTCTTGGCAG 74154 Query 8001 CGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGAT 8060 | || || || ||||| || | || | || ||||| | ||||| || ||||| | Sbjct 74153 CATCGCCAATCAGACGCTC---GGTGTCATTGAATGCGACAAAAGATGGAGTAGTTCGGT 74097 Query 8061 TCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAAT 8120 | || || || || | |||||||| ||||| | | ||| | ||||| || | Sbjct 74096 TACCCTGCTCATTGGGGATAATTTCGCATCGGTCATCGCGATAGATAGCCACGCAAGAGT 74037 Query 8121 ACGTTGTTCCTAAATCAATACC 8142 |||| || || || || ||||| Sbjct 74036 ACGTGGTACCCAAGTCGATACC 74015 >seq214 Length=48468 Score = 136 bits (150), Expect = 5e-27 Identities = 495/763 (65%), Gaps = 19/763 (2%) Strand=Plus/Minus Query 7028 GCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCT 7087 || ||||| | || ||||| || || |||||||||||||| || | || | || | Sbjct 23321 GCCTGGACGGCAGCACCGTAGGCAACGGCCTCATCGGGGTTGATGCTCTTCTCAAGCTTC 23262 Query 7088 TTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCG 7147 ||||||| ||| |||| || | | | || || || || || || || || ||||| Sbjct 23261 TTACCGTCAAAGAAATCGGACAGAAGCTTCTGGATCTTGGGAATACGGGTAGAACCACCA 23202 Query 7148 ACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCG 7207 ||||| ||||| || | || || || || ||||| | || || | || Sbjct 23201 ACCAAGACGATCTCGTCAACCTTGGACTTCTCGATGCCAGCATCCTTGAGAACCTGAGCG 23142 Query 7208 ACAGGTTCCATACATTTACGGAACAAGTC----CATACACAGTTCCTCAAAACGTGCACG 7263 ||||| || | | | || ||| | | | || ||| | || ||||| ||||| Sbjct 23141 ACAGGCTCAAGGG--TGCCAGAGAAAGCCTTGGCGTTCA-AGT-CTTCGAAACGAGCACG 23086 Query 7264 GGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG 7323 ||| |||| | ||| || | || ||| | | || ||||| || ||||| | || Sbjct 23085 GGTGATGGTCATGGTGAAGTCCTCACCATCGAAGAGGGAGTCAATCTCGATGGTGGCCTG 23026 Query 7324 TGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || || | || || || ||||| || ||||| || || ||||| | | || ||| Sbjct 23025 GGCACCGCTG--GACAAGGTACGCTTGGCACGCTCGCAAGCAGTTCGAAGTCTTCGCAGG 22968 Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-G 7440 ||||| | | |||| ||||| ||||| || || | ||||||| | ||| | Sbjct 22967 GCACGGGCATCACCGCTCATATCCTTCTTGGACTTGCGGGTGAACTCTTTCTTGCAGTAG 22908 Query 7441 TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTT 7500 |||| ||| | | |||||||| | |||||||| || || || || ||||| || || Sbjct 22907 TCGAGCAAGT-TGGTGTCGAAATCCTGACCACCCAGATGGGTGTCACCAGCGGTAGCCTT 22849 Query 7501 GACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560 ||| |||| ||| || | ||||| | | || ||||| || ||||||||||| || Sbjct 22848 GACGGTGAAGACACCACCCTGGATGTTGAGAAGAGACACATCGAAAGTACCACCACCAAG 22789 Query 7561 GTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCTTATCGAGACCGTACGCGAT 7617 || | || || ||||| || | || ||| | |||||||| || || Sbjct 22788 ATCGTAGATCAGGACGTTGCGCTCCTTCTCAGACTTGCCAGAGCCCAGACCGTAGGCAAT 22729 Query 7618 AGCCGCCGCCGTTGGTTCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCG 7676 || || || || || || || || |||| || |||| || || |||| ||| | | | Sbjct 22728 GGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACA-TTGAGACCAGAAATGGCACCGG 22670 Query 7677 CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 | || || || || || || || ||||| |||||||| ||||| || | ||| || | Sbjct 22669 CGTCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCGGGGACGGTGATGACGGCCT 22610 Query 7737 CCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 | ||| ||||| || || | | || || || || ||||| Sbjct 22609 TCTCGACCTTCTTGCCAAGCTTGGTCTCGGCAATCTCCTTCAT 22567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635116175398960