Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq315 277 2e-69 seq521 102 1e-16 >seq315 Length=31375 Score = 277 bits (306), Expect = 2e-69 Identities = 1117/1738 (64%), Gaps = 41/1738 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| | ||||| || ||| ||||||| || || | ||||| ||| Sbjct 25902 CCCCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGAGCGCGTT 25843 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 |||||||| ||| || |||||| | | |||| |||||| |||| || |||||| Sbjct 25842 TTGGAGACCTACCACCTCATGTCCAGCAAGCTTTTCACCCACGCCTCACCTACACTCTTC 25783 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||||||||| || | || |||| |||||||| | | | ||||| || Sbjct 25782 AACGCTGGTACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTCGACATGAAGGACGAC 25723 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || | || || |||| |||||||| |||||| ||||| ||| ||||||| Sbjct 25722 AGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGT 25663 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 || ||||| || || |||| || | || | | ||| ||| || || || Sbjct 25662 GGAATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCAAC 25603 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| ||| | || || ||||| ||||| ||||| || ||| ||| || | || || Sbjct 25602 GGTACATCCAACGGCATCATTCCCATGCTCCGCGTCTTCAACAACACTGCCAGATACGTT 25543 Query 111972 AACCAAGCTGGGCG-TCGCAAGGGATCTATCGCAGT------CTATCTTGAGCCATGGCA 112024 |||| ||||| | |||| || || ||| | ||| || ||||| ||||| Sbjct 25542 GACCA----GGGCGGTAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTTGGCA 25487 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084 ||| || | | || || ||||| ||||| ||||| ||| | || || || || Sbjct 25486 CGCAGACGTGTTCGACTTTCTTGATTTGCGAAAGAACCACGGTAAGGAAGAAAACCG-TG 25428 Query 112085 C-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 | ||||| |||||| ||||| ||||| |||||||||||||||||| | || || ||| Sbjct 25427 CTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAAAGA 25368 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203 || ||||| | ||| | ||||| || || || || || | ||| | || | Sbjct 25367 ACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTATGGCG 25308 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCGACTGCGACGGTG 112262 |||| ||||| || |||||| |||||| ||| || | || ||| | ||| | Sbjct 25307 AGGAATTTGAGGCTCTCTACGAAAAGTATGAGCGTGAGGGCCGTGGCCGC-AAGACTATT 25249 Query 112263 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 | || | || | | ||| | | || ||| |||| || ||||| || || | || | Sbjct 25248 CGTGC-CCAGAAGCTCTGGTACTCGATCCTCGAGTCCCAGACCGAAACGGGCAACCCCTT 25190 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 |||||| ||||| || ||||| ||| |||||| || || ||||| |||| || Sbjct 25189 TATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGGGAACCATTCG 25130 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441 || |||||||| || || || ||| | || | | | |||||| ||||| || Sbjct 25129 CAGCTCCAACCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGGTTGCTGTTTG 25070 Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC-ATTTGATT 112500 ||| | || || | || || || | || || | | | | || | | | || | Sbjct 25069 CAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGTCGA-CTACAAAGAAGGCCGCTACGACT 25011 Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560 | | || |||||||| || || || ||| ||||| |||| | |||||| Sbjct 25010 TTCAGAAGCTCCACGAGGTCACTCAAGTGGTCGTCCGTAACCTCAACAAGATCATTGATG 24951 Query 112561 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620 || ||||||| ||||| ||||| || || ||| |||| || || || ||| Sbjct 24950 TCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGACCCATCGGTG 24891 Query 112621 TCGGTGTCCAAGGTCTCGCGGATG-TATTCATTCTTTGTCGCCACGCATTTGATTCCGAC 112679 | ||||| || ||||| || || | | ||| | || || ||| | || || || | Sbjct 24890 TTGGTGTTCAGGGTCTTGCTGACGCTTTTCTTGCTCTG-CGCATGCCCTTCGAGTCTCCC 24832 Query 112680 GAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCG 112739 || || || |||| || || || ||||| || || ||||| || || || Sbjct 24831 GAGGCCCGTGAGCTCAACAAGCAGATCTTCGAGACCATCTACCACGCTGCACTGACAGCC 24772 Query 112740 AGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 112799 | ||| |||| | | | || || || ||||| |||| ||||| || || Sbjct 24771 TCTCTTGAGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGCTCTCCCGCCTCG 24712 Query 112800 CAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC-----ACTACGAC 112853 |||| | |||||||| || |||| |||| || |||| |||| | || Sbjct 24711 GAAGGTATTCTTCAATTCGACATGT-GGAATGT-----CAAGCCTTCTGAGTTATGGGAG 24658 Query 112854 TGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGG 112911 |||||| ||| ||||| | ||||||||| | ||| |||| ||| || || || | | Sbjct 24657 TGGGACAATCTGAAGGAGCAGATCAAGGAGCACGGTATTCGCAAC--TCGTTGCTGCTCG 24600 Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971 | || ||||| || ||||| ||| | ||||| ||||||| ||||| |||||||| || | Sbjct 24599 CTCCCATGCCCACCGCCTCGACCTCGCAAATTCTGGGTAACAATGAGTGCTTTGAGCCAT 24540 Query 112972 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 113031 ||||| | ||||| || | | | | | | || || || || | | |||||| Sbjct 24539 ACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAATTCCAGGTCGTCAACCCCT 24480 Query 113032 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 113091 ||| | | || ||| || || ||||||||||| | | |||||| | | ||| Sbjct 24479 GGCTCCTCAAGGATCTCGTCGACATGGGTCTCTGGTCTGATGCCATGAAGAACCGCATCA 24420 Query 113092 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGT 113151 | | | |||||||||||| || || |||| || | || || ||| | | Sbjct 24419 TTGCCGAGAATGGTTCCATTCAGAACATCCCCAATATCCCCGCCGACATCAAGGCTCTCT 24360 Query 113152 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 113211 | || |||||||| || | |||| || | |||||||| ||||| ||| Sbjct 24359 ATAAGACTGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCGCCGATCGCGGTG 24300 Query 113212 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAA 113269 ||| || || | |||| ||| | || | |||| | ||| || ||| ||| Sbjct 24299 CCTTTATCGACC--AGTCCCAGTCGCTCAACGTTCACATGAAGGATCCTACTATGGGCAA 24242 Query 113270 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 | || | ||||||||| | | |||||| ||||||||| ||||| ||||| ||| Sbjct 24241 GATCACCTCTATGCACTTTGCTGGCTGGAAGTTGGGTCTCAAGACGGGCATGTACTAC 24184 >seq521 Length=16305 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 102203 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 102262 ||| ||||| ||||||||| ||| |||| | | |||| |||||||||||||| || Sbjct 13531 TGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATTTTCTGGCTCAAGAAGCGTGG 13590 Query 102263 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCA 102322 ||| ||||| || ||| |||||| ||||| |||||||| ||||| ||||| | ||| Sbjct 13591 TCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCTCCCGTGATGAGGGTTTGCACAC 13650 Query 102323 AGAGTTTGC 102331 ||| ||||| Sbjct 13651 AGACTTTGC 13659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620726152067680