Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq315 235 6e-57 seq115 111 2e-19 >seq315 Length=31375 Score = 235 bits (260), Expect = 6e-57 Identities = 1094/1705 (64%), Gaps = 55/1705 (3%) Strand=Plus/Plus Query 109378 AATTGGATTGGTCGAGCTTTCGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCA 109437 || ||||| ||| ||| |||| || ||| | || ||||| ||||| |||||||| Sbjct 24149 AACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGACCC 24208 Query 109438 GCCTTCCATGCGTACATA-TGCATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAA 109496 |||||| || || | ||||| || | || ||| | || ||| || ||| Sbjct 24209 AACTTCCA-GCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGTG 24267 Query 109497 CAAGTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGAT 109556 | ||| | |||||| ||||| ||||| || ||| ||||| || ||||| | ||| | Sbjct 24268 AACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCGGCCATCTGGATAAC 24327 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 | || ||| ||||| |||||||| || | | |||||| || |||| || | Sbjct 24328 ATGACGCTGAGAAATCTCCCAAACAGTCTTATAGAGAGCCTTGATGTCGGCGGGGATATT 24387 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGA 109673 |||||| ||||| || |||| || | |||| | | |||||| | | || Sbjct 24388 GGGGATGTTCTGAATGGA---ACCATTCTCGGCAATGATGCGGTTCTTCATGGCATCAGA 24444 Query 109674 CCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACC 109733 ||||||||| | | |||||| | | || |||||| || |||||||| Sbjct 24445 CCAGAGACCCATGTCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACC 24504 Query 109734 AGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCC 109793 ||| | || || |||| ||||| | |||||| || || || ||||||||||| || Sbjct 24505 AGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACC 24564 Query 109794 TAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 || ||||| | || || || |||||||||||||| | || | ||| || | ||| Sbjct 24565 CAGAATTTGCGAGGTCGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACC 24624 Query 109854 CTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTC 109913 | | ||| | | |||| || |||||| || | | ||| | || || Sbjct 24625 GTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTC----CCATAACTCAGA--AGGCTT 24678 Query 109914 ACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTC 109973 ||| |||||| || |||||| | ||| || | || ||||| |||||||| | Sbjct 24679 GACATTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGA 24738 Query 109974 GTACGACCCCTCAACCTCGGCCAACTCGGATGA-AGCCTCT-AGTGCCGCATGATACATA 110031 ||| | || | | | ||||| ||| | || || || | ||||| || || || || Sbjct 24739 GTAGGGGCCTTGCTCTTTGGCCAGCTC--AAGAGAGGCTGTCAGTGCAGCGTGGTAGATG 24796 Query 110032 GTCTCAAAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGACCA 110088 ||||| || || || || |||| || | ||| | | |||||||| | | Sbjct 24797 GTCTCGAAGATCTGC---TTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCG- 24852 Query 110089 CAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCAT 110147 || || || ||| | || || |||||||||||||| | ||| ||||| ||||| ||| Sbjct 24853 CAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCAT 24912 Query 110148 GTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATT 110207 ||| | ||||| || | ||||||| |||| || |||| | ||||| || Sbjct 24913 GTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTT 24972 Query 110208 CTT--CGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCC 110265 || | || | | |||| || ||||| || | | ||| | | | ||| Sbjct 24973 ACGGACGAC-CACT-TGAGTGACCTCGTGGAGCTTCTGAAAGTCGTA-GCGGCCTTCTTT 25029 Query 110266 TTATT-GACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTT 110324 || | ||| | || || |||| ||| || | ||||| |||| | ||| || Sbjct 25030 GTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGG 25089 Query 110325 GTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTT 110384 | | ||| || | || ||||| |||| |||||| || |||| |||| |||||| Sbjct 25090 GGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTT 25149 Query 110385 CTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGT 110444 ||| || || |||||| |||||||| || ||||| | ||| | || ||||| || Sbjct 25150 CTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGT 25209 Query 110445 CTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGA- 110500 ||| |||| ||| || | | ||| | | || | ||| | | ||| |||| || | Sbjct 25210 CTGGGACTCGAGGATCGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCG---GCCAC 25265 Query 110501 GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAA 110560 | || || ||| ||||| ||| | |||||||||||| || || ||||| | Sbjct 25266 GGCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCTCGCCATAGCAATCAGCCA 25325 Query 110561 GACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCA 110620 | || || || |||||| | ||||| ||||| || || || || | ||||| Sbjct 25326 GGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCA 25385 Query 110621 TGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCAC 110680 |||| || || || ||||||| || ||| ||||| || ||| ||||| | || Sbjct 25386 TGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTAC 25445 Query 110681 CTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGA 110740 | ||||| || | || | |||||| | | || | |||||| || ||||| |||| Sbjct 25446 CGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGA 25505 Query 110741 CAGC-GATG-----GATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCAT 110794 || ||| | || ||| ||| |||||| ||| || | || ||| | Sbjct 25506 TGGCAAATGCACCAGGTCGCTT---GTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGT 25562 Query 110795 TGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGG 110854 ||||||| | |||||| ||||| || || | |||| ||| || || || ||| | Sbjct 25563 TGAAGACGCGGAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAG 25622 Query 110855 ACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTT 110914 | | ||||| ||| ||||| | || || || ||||| ||| ||| || Sbjct 25623 AGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCA 25682 Query 110915 GTGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATT 110973 ||||| ||| |||| || | || ||||| ||||| || |||| || | | | Sbjct 25683 TGGCACAGGTCT-TGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACT 25741 Query 110974 AGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCA 111033 || || || ||||||| |||| | || || || || |||||||||||||||| || Sbjct 25742 AGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCG 25801 Query 111034 TGAATGAACAGACCTTG--GGACAT 111056 || |||| || |||| |||||| Sbjct 25802 TGGGTGAAAAG--CTTGCTGGACAT 25824 >seq115 Length=73652 Score = 111 bits (122), Expect = 2e-19 Identities = 277/413 (67%), Gaps = 16/413 (4%) Strand=Plus/Minus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 ||||||||||||||| || | ||||| | || || || || | ||||| ||| |||| Sbjct 14486 ATCGAAACGACCTGGTCGCATGAGAGCCTTGTCCAGGATGTCTGCGCGGTTGGTACCGGC 14427 Query 11565 AATGACTACAATGCCAG-TCTC-ATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | ||| |||| || | || | | ||| ||| || |||||||| || || | ||||||| Sbjct 14426 CAAGACGACAA--CCTGCTCACGAGTGTTGAACCCATCCATTTCCGTCAGGATCTGGTTG 14369 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTT-------CTT 11675 | ||| || ||||| |||||| | || | | ||| | ||| | Sbjct 14368 AGCGTGGCCTCTCGCTCGTCGTTGCCACCAAATCCTCGT-CCGCTCTCTTGACGAGCCCG 14310 Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTC 11735 ||| | || || || || || || || | ||| || || || ||| ||| | | Sbjct 14309 ACCAATGGCATCGATTTCGTCAATAAAGATGATGCAAGGAGCATTCTTGCGTCCCTCTGC 14250 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CG 11793 ||||| || || || | || |||||||| || ||||| || ||||| | | | Sbjct 14249 AAAAAGATCTCGAACTCTTGACGGACCAACACCGACAAACATTTCCACGAATTCGGAACC 14190 Query 11794 GCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 || | | ||||| |||||||| |||||| ||||| |||| ||||| || ||| Sbjct 14189 GCTCA-CGCTGAAA-AAGGGAACGCCAGACTCGCCAGCAGTGGCCTTTGCGAGAAGCGTC 14132 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 ||||| ||||| || | || ||||||| ||||||||||| ||||| || || Sbjct 14131 TTACCAGTACCCGGAGGGCCGGCGAGAATAGCGCCACGGGGAATCTTTGCTCC 14079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588960583553200