Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq315 280 2e-70 >seq315 Length=31375 Score = 280 bits (310), Expect = 2e-70 Identities = 1168/1809 (65%), Gaps = 53/1809 (3%) Strand=Plus/Plus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGAGAGCTT 105654 |||||||| || |||||||| || ||||| || || | |||||||| | || ||| Sbjct 24185 TAGTACATGCCCGTCTTGAGACCCAACTTCCA-GCCAGCAAAGTGCATAGAGGTGATCTT 24243 Query 105655 GGACATCGTTGGACTTTCCATGAAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGA 105712 | ||| || ||| | |||| || || | ||| |||| |||| || ||| | Sbjct 24244 GCCCATAGTAGGATCCTTCATGTGAACGTTGAGCGACTGGGACT--GGTCGATAAAGGCA 24301 Query 105713 CCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAG 105772 || || | || ||||| | || |||| | || ||||| || || ||| Sbjct 24302 CCGCGATCGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTATAG 24361 Query 105773 AGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACC---CCCCGCCTTG 105829 ||| |||||| || | ||||||| | ||| || ||||| ||||| | | || || Sbjct 24362 AGAGCCTTGATGTCGGCGGGGATATTGGGGATGTTCTGAATGGAACCATTCTCGGCAATG 24421 Query 105830 ACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGA 105889 | || | | |||||| | | ||||| ||||| || | |||||| |||| ||| Sbjct 24422 A---TGCGGTTCTTCATGGCATCAGACCAGAGACCCATGTCGACGAGATCCTTGAGGAGC 24478 Query 105890 TGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTG 105949 |||||| | | || || || || | | | | | | || ||||| | |||| Sbjct 24479 CAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTG 24538 Query 105950 TAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGT 106009 || || |||||||| ||||| ||||||| ||||| | ||| ||||| || ||||| || Sbjct 24539 TATGGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTCGAGGCGGTGGGCATGGGA 24598 Query 106010 GCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCC 106067 || | || || || ||| |||| ||| | |||||||| | ||||| ||| |||| Sbjct 24599 GCGAGCAGCAACGA--GTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCC 24656 Query 106068 AGTCG--TAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGA 106125 | || || | || || || || |||| |||| || |||||||| | |||| || Sbjct 24657 ACTCCCATAACTCAGAA-GGCTTGACATTCC-ACATGTCGAATTGAAGAATACCTTCCGA 24714 Query 106126 CGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGC 106185 | |||||| |||| || || |||| ||||| ||| |||| ||| || | Sbjct 24715 GGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGG 24773 Query 106186 CTC-CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCAT 106244 || ||| | ||||| || ||||| || ||||| | || | ||| ||| || Sbjct 24774 CTGTCAGTGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGG 24833 Query 106245 CTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAA 106303 || || || | ||| || | || ||| | || || ||||| |||||||| | | Sbjct 24834 GAGACTCGAAGGGCATGCG-CAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACA 24892 Query 106304 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTG 106363 || || |||| |||||||| || || || || ||||| ||| ||| || Sbjct 24893 CCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACA 24952 Query 106364 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAA 106423 ||||||| ||| || || | || | | |||| || || || || | | | Sbjct 24953 TCAATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGAAAG 25012 Query 106424 TCAAAAGTGCGAGTCTCTTCATT-GACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 106482 || | || ||| | | | ||| | || ||||| | || ||||| ||||| Sbjct 25013 TCGTAGCGGCCT-TCTTTGTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCA 25071 Query 106483 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTT 106542 |||||| |||||| | |||||| | || || || |||| |||||| || Sbjct 25072 AACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCG 25131 Query 106543 AATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTA 106602 ||| || |||| ||||| ||||| |||||| ||||||| ||||||||||| ||||| | Sbjct 25132 AATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAA 25191 Query 106603 GGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTA 106661 ||| | ||||| || ||||| |||| ||| || | | ||| | | || | ||| | Sbjct 25192 GGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATCGAGTACCAGAGCTTCTG-GGCACG-- 25248 Query 106662 CAATGGCGTT--GGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 106718 ||| | || |||| || ||||| ||| |||||| |||||| || ||||| |||| Sbjct 25249 -AATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCT 25307 Query 106719 CACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 106777 | ||| || || | || || || || || ||||| | || | ||| | || Sbjct 25308 C-GCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCG 25366 Query 106778 CCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA 106837 || || || ||||||||||| || ||||| |||||||| | ||||| || | | Sbjct 25367 TTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGA 25426 Query 106838 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 106897 || ||||| | ||| ||||| ||| || ||||| || || | | || ||| Sbjct 25427 GCACGGTTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCG 25486 Query 106898 TGCCATGGCTCAAGATAG------ACTGCGATAGATCCCTT-TCGACGCCCAGCTTGATT 106950 ||||| ||||| || ||| | ||| || || ||| | ||||| || | Sbjct 25487 TGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCC----TGGTC 25542 Query 106951 TACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACC 107010 || || | || ||| ||| || ||||| ||||| ||||| || || | ||| ||| Sbjct 25543 AACGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAATGATGCCGTTGGATGTACC 25602 Query 107011 ATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACC 107070 || || || ||| ||| | || | | |||| || || || || || Sbjct 25603 GTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCC 25662 Query 107071 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 107130 |||||| ||| ||||| ||||| | | ||||| | |||||||||| || Sbjct 25663 ACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCT 25722 Query 107131 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 107190 ||| ||||| || ||| ||||| || |||| ||| | || |||||||| || Sbjct 25723 GTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTT 25782 Query 107191 GAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCC 107248 |||||| || |||| ||||| ||| | | |||| |||||| || ||| |||||| Sbjct 25783 GAAGAGTGTAGGTGAGGCGTGGGTGA--AAAGCTTGCTGGACATGAGGTGGTAGGTCTCC 25840 Query 107249 AAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGG 107308 || || ||||||| || || || |||| || || ||||||| ||||| ||| Sbjct 25841 AAAACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGG 25900 Query 107309 GGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAG 107367 || || | | |||| | ||| ||||||| | || |||| || || |||| Sbjct 25901 GGCCGCTCGACAATCTTGCCGTTGAGTTTGAGAAGATATGATC-TCTCCAGAGTCTTGAA 25959 Query 107368 ACCAAAGTA 107376 |||||||| Sbjct 25960 GCCAAAGTA 25968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589965357252560