Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 2e-15 seq104 95.1 8e-15 >seq13 Length=187677 Score = 96.9 bits (106), Expect = 2e-15 Identities = 144/202 (71%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 |||||||| ||||| ||||| ||||| || | || | || |||||||| |||||| Sbjct 68388 GTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGGCCGTCTTCCAGCTGCTTTCCG 68329 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || |||||||||||||| | || | |||||||| || |||||| |||| Sbjct 68328 GCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGATTTG 68269 Query 34905 ACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || | ||||| ||| | || || || | ||| || || ||||| || | Sbjct 68268 AC--AT--TGTCGATGGTATCAGAAGATTCGACTTCCAAGGTGATAGTCTTTCCAGTCAA 68213 Query 34961 AGTCTTCACAAAGATCTGCATA 34982 ||||| ||||| || |||||| Sbjct 68212 GGTCTTGACAAAAATTTGCATA 68191 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||||| | || | || || ||||| ||||| || || Sbjct 67625 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAG 67566 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||||| ||||| Sbjct 67565 ATCAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTG 67506 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || |||| || ||||| || || ||||| ||||| || Sbjct 67505 TCAATGGTATCAGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACG 67446 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 67445 AAGATTTGCAT 67435 >seq104 Length=76965 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||||| || ||||| ||||| ||||| ||| | || |||| || Sbjct 66883 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGGCCATCCTCG 66824 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || |||||||||||||| | || | ||||||||||| Sbjct 66823 AGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 66764 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || | ||||| || | ||| || || | ||| || || Sbjct 66763 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATTGT 66708 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || |||||||| || || || || |||||||| || Sbjct 66707 CTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 66672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324625315147632