Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq315 109 6e-19 >seq315 Length=31375 Score = 109 bits (120), Expect = 6e-19 Identities = 219/325 (67%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 ||||||||| || ||||| || | | | ||||| || || || |||||||| | | Sbjct 25297 CTCAAATTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGT 25356 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||||||| | | |||| || | |||| || | |||||| ||||| ||||| | || Sbjct 25357 CCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAA 25416 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | || | || | |||||| || || ||| || | ||||||||||| | Sbjct 25417 GAGGTCGCGAGCACGGTTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAA 25476 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | || || ||||| || || | || || || | | |||| ||||| || ||||| || Sbjct 25477 CACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCC 25536 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || || | ||||||||||| ||||| | || | | ||| || | || || || || Sbjct 25537 CTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAATGATGCCGTTGGA 25596 Query 48425 TATACCATTGGTTCCCGAAATATAA 48449 | |||| ||||| || | ||| ||| Sbjct 25597 TGTACCGTTGGTGCCGGCAATGTAA 25621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562094086802160