Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq65 170 2e-36 seq13 96.9 3e-14 seq15 95.1 1e-13 >seq65 Length=104434 Score = 170 bits (188), Expect = 2e-36 Identities = 468/711 (66%), Gaps = 11/711 (2%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 || || |||||||| | |||||||||||| | ||||| || || || |||| || Sbjct 74823 GCCCTGCGTCGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCATCCTCTCTTCTGCAGCT 74882 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 || || || ||||| | ||||| |||| ||||| || |||| | || |||||| | Sbjct 74883 CAGACTACGATTGAGATTGATTCTCTATTCGAGGGTATCGATTTCTACACCCCTATTACC 74942 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 ||||| || ||||| |||| ||||| || | || || | || || || Sbjct 74943 CGGGCCCGTTTCGAAGAGCTTTGCCAGGATCTTTTCCGCTCCACCATCCAGCCTGTCGAC 75002 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 | ||| | | || | |||||||| ||||| |||| ||||| ||||| | |||||| Sbjct 75003 CGTGTTCTCACTGACGCCAAGATTGACAAATCTCAAGTTCATGAGATTGTCTTGGTTGGT 75062 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT--TATTTCAATGGTAAAA 552192 || || || ||||||| ||| | |||| | | | | || ||||| || ||| Sbjct 75063 GGTTCCACCCGAATTCCCCGAATCCA-GAAAC-TCATCTCCGACTACTTCAACGGCAAAG 75120 Query 552193 AATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAG 552252 | || | | | || || ||||| |||||||| || |||||||| | || || | Sbjct 75121 AGCCCAACAAGTCTATCAACCCTGATGAAGCTGTTGCATACGGTGCCGCTGTCCAGGCTG 75180 Query 552253 CTATTCTTTCTGGACAAACTGATGAAAA----ACTA-CAAAATATTGTACTTGTAGATGT 552307 |||| || ||||| | ||| | || |||| | |||| |||| | | || || Sbjct 75181 CTATCCTGTCTGGTGACACTTCTTCCAAGTCTACTAACGAAATCTTGT--TGCTTGACGT 75238 Query 552308 TACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAG 552367 | ||| | ||||| ||| | || || | || || || ||||| || || || | Sbjct 75239 CGCGCCTTTGTCTCTGGGTATTGAGACCGCCGGTGGAATGATGACGAAGCTCATTCCCCG 75298 Query 552368 AAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAAC 552427 || || || ||||| || || ||| || || || || | ||| || || || | Sbjct 75299 TAACACAACCATTCCAACCAAGAAGTCTGAGGTTTTCTCGACCTTTTCTGACAACCAGCC 75358 Query 552428 TGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACT 552487 || || ||||| | ||||| || || || | ||| || || || || | | | Sbjct 75359 TGGGGTGCTCATTCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTAAT 75418 Query 552488 TGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT 552547 || | ||| | | || ||||| || ||||| ||||| || || || |||||||| Sbjct 75419 GGGCAAGTTTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGCGTTCCTCAGATTGAAGT 75478 Query 552548 TACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||| || ||| ||||||||||||| || |||||||| ||||| ||| || Sbjct 75479 TACCTTTGATCTCGATGCCAATGGTATCATGAATGTGTCTGCTGTTGAAAA 75529 Score = 140 bits (154), Expect = 3e-27 Identities = 327/487 (67%), Gaps = 10/487 (2%) Strand=Plus/Plus Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 |||||||| ||||||| || |||||| ||||||||||||||| ||| | |||| || Sbjct 74072 GAAATTATCCCCAATGAGCAGGGTAACCGAACTACTCCATCTTTTGTCGCATTCAATGAC 74131 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || || | | | |||| ||||| || || |||| | | || || ||| ||| || Sbjct 74132 ACCGAGCGTCTGATTGGCGATGCTGCCAAGAATCAGGTCGCTATGAACCCTCACAACACC 74191 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | || || || |||||||| ||||| | | || | ||| || || ||||| ||| Sbjct 74192 GTCTTCGACGCCAAACGTTTGATTGGCCGCAAGTTCGAGGATCCGGAGGTCCAGGCTGAT 74251 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT--- 550291 |||||||| | || ||| | | || | || ||||||| | | ||| | Sbjct 74252 ATGAAGCACTTTCCCTTCAAGGTGATTGAAAAACAAGGCAAACCTT-TGGTCAAGGTCGA 74310 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 | ||| |||| | || |||| |||| ||| |||| || || ||| | | || Sbjct 74311 ATTCA--AAGGGGAAGAGAAGGAATTCACACCTGAAGAAATATCTTCCATGATCCTCATC 74368 Query 550352 AAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCA-AGAAGTTACGGATGCAGTAATAA 550409 || ||| | | ||| || || || |||| || | || | | || || | | Sbjct 74369 AAGATGCGCGAGATTGCCGAGGGC--TTCTTGGGCACACCGGTCCCAAACGCTGTCGTCA 74426 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 |||| || || || || || ||||| || || || ||||| || || || || ||||||| Sbjct 74427 CTGTCCCCGCCTACTTCAACGACTCTCAGCGGCAGGCTACCAAGGACGCCGGTCGTATTG 74486 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | ||||| || || |||||||| ||||| || |||||||| || || |||| ||||| | Sbjct 74487 CCGGACTCAACGTCCTTCGTATCATCAACGAGCCTACTGCCGCCGCCATTGCTTATGGTC 74546 Query 550530 TTGATAA 550536 | || || Sbjct 74547 TCGACAA 74553 >seq13 Length=187677 Score = 96.9 bits (106), Expect = 3e-14 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTCT 563315 ||||| || || ||||| | || ||||| || || ||||| || ||| || || | Sbjct 68409 AGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTC-GCTCAGTGTGCG 68351 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| || || ||||||||||||||||||| |||||| || ||||| ||||| || Sbjct 68350 GCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTCCCTC 68291 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 ||||| ||||| || ||| || || || ||||||| || | | ||| | | Sbjct 68290 CTTATCCTGAATCTTGGATTTGACATTGTCGATGGTATCAG-AAGATTCGACTTCCAAGG 68232 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | | ||| || ||||| | || || || |||||||||||| Sbjct 68231 TGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCATA 68191 >seq15 Length=178446 Score = 95.1 bits (104), Expect = 1e-13 Identities = 100/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCA-AGCTACTAAAGATGCTGGACGTAT 550467 |||||||| || || |||||||| | || ||||| ||| || || |||||||| | || Sbjct 150360 ACTGTACCTGCCTACTTTAATGATGCTCAGCGTCAGAGC-ACCAAGGATGCTGGTCAGAT 150418 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || || |||||||| ||| | |||| || || ||||||||||| ||||| ||||| Sbjct 150419 CGCCGGTCTGAATGTTCTCCGTGTCGTCAACGAGCCCACTGCTGCTGCTCTTGCCTATGG 150478 Query 550528 ACTTGATAA 550536 ||||| || Sbjct 150479 CCTTGAGAA 150487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029185259836060