Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq315 450 3e-121 seq521 131 3e-25 >seq315 Length=31375 Score = 450 bits (498), Expect = 3e-121 Identities = 1239/1876 (66%), Gaps = 76/1876 (4%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || |||||||||||| ||||| | ||||||||||| ||||| Sbjct 24143 ACGGTGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTG 24202 Query 212613 AGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGG 212672 || ||| |||||| | |||||| | |||| |||| | || || || Sbjct 24203 AGACCCAACTTCCAGCCAGCAAAGTGCATAGAGGTGA---TCTTGCCCATAGTA----GG 24255 Query 212673 TCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTG 212732 ||||| || || | ||| || ||||| |||||| || || | | | Sbjct 24256 --ATCCTT------CATGTGAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGA 24307 Query 212733 TCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCT 212792 || |||||||| | || | || | ||| || | |||||| || ||||| ||| | Sbjct 24308 TCGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTATAGAGAGCC 24367 Query 212793 TTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTCAGC 212849 |||| ||| | |||| |||||||||||| | || || | | ||| | | Sbjct 24368 TTGATGTCGGCGGGGATATTGGGGATGTTCTGAATGGAACCATTCTCGGCAATGATGCGG 24427 Query 212850 TGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGG 212909 | | |||| | || |||||| ||| || | || ||||| || ||| Sbjct 24428 TTCTT---CATGGCATCAGACCAGAGACCCATGTCGACGAGATCCTTGAGGAGCCAGGGG 24484 Query 212910 TTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGC 212969 ||||| | |||||| ||||| | | || | | |||||||| ||| || ||||| ||| Sbjct 24485 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 24544 Query 212970 TCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACC 213029 || | || ||| ||||| |||||||| || | || ||| |||||||||||||| | | Sbjct 24545 TCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTCGAGGCGGTGGGCATGGGAGCGAGC 24604 Query 213030 AGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCAT 213089 || | ||| | | |||||||| ||| | | || | |||| |||||| Sbjct 24605 AGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCAT 24664 Query 213090 CTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTC 213149 |||| ||| ||| || ||||||||||| || || | || |||| Sbjct 24665 AACTCAGA-AGG--------CTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGAG 24715 Query 213150 ACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCC 213209 |||| ||||| | | | ||||||||||| ||||| ||||||||||| || || Sbjct 24716 GCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCT 24775 Query 213210 TGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGG 213269 ||| ||||||| ||||||||| || || |||| | ||||||||| |||||| || Sbjct 24776 GTCAGTGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGA 24835 Query 213270 GACGTGAAGGGCATCATCATGCGTTGGAACA-CATCAGCCAGCCCCTGGACCCCGATGCC 213328 ||| ||||||||| || | | ||| | | ||||| || ||||| || || | || Sbjct 24836 GACTCGAAGGGCATGCGCA-GAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACC 24894 Query 213329 GATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGT 213387 |||||||| |||| || ||| ||| |||| |||||| | ||||||| |||| | Sbjct 24895 GATGGGTCGATGTCGCATGTTGCTGTTGCGAGC-CTCCTCAATGGGGTAATGGTTGACAT 24953 Query 213388 CGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGAT 213447 | ||||||||||||||||| ||| | |||||| ||||| | | || | || || Sbjct 24954 CAATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCT---GA- 25009 Query 213448 TGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGGCCAGGT 213501 || |||||| || || | || || |||||||||| | ||||| || Sbjct 25010 --AAGTCGTAGCGGCCTTCTTTGTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGT 25067 Query 213502 TGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGC 213561 ||||||| || ||||| | || | | |||||| |||||||| |||||||||||| || Sbjct 25068 TGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGC 25127 Query 213562 ATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCA 213621 || ||||| |||||||||| ||||| |||| |||| | ||||||||| |||| Sbjct 25128 TGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCA 25187 Query 213622 TGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCT 213681 | ||||| || || || ||||||| | || ||| | |||||| | | ||| Sbjct 25188 TAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATCGAGTACCAGAGCTTCTGGGC-- 25245 Query 213682 TGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAAT 213740 || | | || | || ||| | | | ||| |||| ||||||||| | | ||| Sbjct 25246 --ACGAATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAAAT 25303 Query 213741 TCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTC 213799 || | ||| || | | | |||| || || || ||||||||||||| |||| || Sbjct 25304 TCCTCGCCATAGCAATCAG-CCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATC 25362 Query 213800 CCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTC 213859 ||||| | | ||| | || |||||| || || |||| |||||| || ||| ||||| Sbjct 25363 CCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTC 25422 Query 213860 CCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTC 213919 | | | | || ||| || ||| || |||| ||| |||||||| || | ||| Sbjct 25423 GCGAGCACGGTTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTC 25482 Query 213920 CGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTC 213976 |||||||| ||||| | |||||||||||| || || || | |||| ||||||||||| Sbjct 25483 TGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTC 25542 Query 213977 CACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGT-C 214035 || ||||| ||||||||| ||| || | ||| | | |||||||| ||| | Sbjct 25543 AACGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAATGATGCCGTTGGA-TGTAC 25601 Query 214036 CGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA----GAGCCCT 214091 ||||||| || || || || ||||||| || | || ||| |||| | || Sbjct 25602 CGTTGGTGCCGGCAATGTAAGAGCCGGTAGCAC---GGATGC-GGTGGACGTTCAAGCCG 25657 Query 214092 ATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCC 214151 || ||||| || ||||||||||||||| ||| | | | ||| || ||| ||| | Sbjct 25658 ATTCCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCA 25717 Query 214152 ATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCA 214211 |||||||| || | | || | | ||| ||| || ||||| || | ||| Sbjct 25718 ATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCA 25777 Query 214212 GAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTC 214271 | |||||| || || || ||| ||| | | || |||| | || | ||| ||||||| Sbjct 25778 GCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAAAGCTTGCTGGACATGAGGTGGTAGGTC 25837 Query 214272 TCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCA--CCTCATCAGCATGT 214329 |||| || |||| || | | | || |||| | ||| | ||||| Sbjct 25838 TCCAAAACGCGCTCAATGT--TGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGT 25895 Query 214330 GCTGGGGCCTCT---CTATGGGTCCTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAG 214386 ||||||||| || | || || ||| | ||||| || || || | |||||||| Sbjct 25896 GCTGGGGCCGCTCGACAATCTTGCCGTTGAG---TTTGAGAAGATATGATCTCTCCAGAG 25952 Query 214387 TCTTGAACCCAAAGTA 214402 ||||||| |||||||| Sbjct 25953 TCTTGAAGCCAAAGTA 25968 >seq521 Length=16305 Score = 131 bits (144), Expect = 3e-25 Identities = 299/440 (68%), Gaps = 15/440 (3%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 || || || || |||| ||||| |||||||||||||| || |||| || ||||||||| Sbjct 13950 TGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTACCACCCAAGGAAATGTTCTCC 13891 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTG-TTCCAGCAG 47958 ||||| ||||||||||| || || || | || | || ||| | ||| || Sbjct 13890 ATGAAATCGAAGGGGTTGGCGGTTTTGTATA-CCTTTTCGTTACCAAGAGCAACCAATAG 13832 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG-GG 48017 | |||| ||||| | || || |||| ||| || ||| ||||||||||| ||| | Sbjct 13831 GCGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATGCCTAGGAGAGC 13772 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT-- 48075 |||| |||| ||||| || |||||||| | ||| || || || || | || Sbjct 13771 ACAC-GGCAGAGCCTCGGTCAGAAACTCTTGCTCGATGCCAACAGCGTCGGTGATGATAT 13713 Query 48076 -CTGCTTAACGCGGGACTCTGAGGGTTTGTTGC-GCAGGTGCTTGGCATAGAGCATGCAG 48133 ||| ||| | || || || | | ||| || ||| | | | || || Sbjct 13712 CCTGGATAATTTG---CT-TGCTGGCTCGGTGCTTAAGATGC---GAGTGCAACAGACAT 13660 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| ||||||| || || || ||| ||| || |||| |||||| ||| || Sbjct 13659 GCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGGCCG 13600 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | || |||||||||||||| | || || | || |||||||||| Sbjct 13599 GGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGATG 13540 Query 48254 CCCTCCACTGCCGCGAACGC 48273 |||||||| || ||||| || Sbjct 13539 CCCTCCACAGCAGCGAAAGC 13520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931508417128960