Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq315 340 3e-88 seq521 122 2e-22 >seq315 Length=31375 Score = 340 bits (376), Expect = 3e-88 Identities = 863/1289 (67%), Gaps = 63/1289 (5%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGG-CCTCGGG 221475 ||||| |||||||||||||||||||| |||||| ||||||||| ||| || ||||||| Sbjct 24776 GTCAGTGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAG-CTCACGGGCCTCGGG 24834 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||||||||| ||||| |||| |||| || || ||||| || || | ||| Sbjct 24835 AGACTCGAAGGGCATGCGCAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACC 24894 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCG-GCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 |||||| | |||| | ||||| | ||| ||| | || | ||| ||| |||||| Sbjct 24895 GATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCA---ATGGGGTAATGGTTGAC 24951 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 || || | ||||||||||| | || |||| | |||||| |||||||| Sbjct 24952 ATCAATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGAAA 25011 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 | | | || ||| || | | | || || || || ||||||| Sbjct 25012 GTCGTA---------GCGGCCTTCTTTGTAG---TCGACGAAGGCAGGCAGGGCAAGAGA 25059 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||||| ||| || || || ||||| || | |||| |||||||| || || || Sbjct 25060 GGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAG 25119 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||| || ||||| ||||||| || || || ||| | ||| || ||||| Sbjct 25120 GTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTT 25179 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||||||||| ||| || || ||| | | | || ||| || |||||| | Sbjct 25180 GTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATCGAGTACCAGAGCT- 25238 Query 221893 TCTGG-CGCTCACCGTCCTCTTG--ACTGCACCCTCGGTC----TTTTCATACCCGGTAT 221945 ||||| | | | ||| | | || || | | || || ||||| ||| Sbjct 25239 TCTGGGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTTTC-------GTAG 25291 Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005 ||||| | |||| | || || || || ||||||| || ||| | |||||||| Sbjct 25292 AGAGCCT--CAAATTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACA 25349 Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065 | || |||| | | ||| | || ||| | || ||||||||| || ||||||||||| | Sbjct 25350 TGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAG 25409 Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125 | | ||||| || | | || | || ||| |||| ||| || | || ||| | || Sbjct 25410 CAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAA 25469 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 | || || | ||| |||||||| ||||| || |||| ||| | || || |||||||||| Sbjct 25470 AGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGT 25529 Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGT 222244 | || ||||| || || || ||| | |||||||| ||| || | || | | Sbjct 25530 TACCGCCCTGGTCAACGTATCT-GGCAGTGTTGTTGAAGACGCGGAGCATGGGAATGATG 25588 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG 222302 ||||||||| |||||||||||| |||||| | ||| || | || | | ||| Sbjct 25589 CCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCAC---GGATGCGGTGG 25645 Query 222303 -CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361 | || |||||| ||||| || || ||||||||||| ||| ||||||||||||| Sbjct 25646 ACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCG 25705 Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421 ||| || || || ||| ||||| | || | || ||||| || |||| |||| || Sbjct 25706 TAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACAT 25765 Query 222422 TTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGC-CCCTAGACAT 222480 | || || || ||||| || || || || |||||| || || ||| || ||||| Sbjct 25766 TGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAA-AAGCTTGCTGGACAT 25824 Query 222481 CAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT-----CTGCATGGCG 222535 || | ||| ||||| | || | | |||||||| || ||| | ||| ||| Sbjct 25825 GAGGTGGTAGGTCTCCAAAACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCG 25884 Query 222536 CATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGT 222593 || | || ||||| |||||||| ||| ||| || | ||| | |||| || | Sbjct 25885 CA--TAAT---CATGTGCTGGGGCCGCTCGACAATCTTGCCGTTGAGTTTGAGA--AGAT 25937 Query 222594 ACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGA-GGTCAAAGTCTCTGCCGTGAACC 222652 | ||| | |||||||||||||| |||||||| |||| || ||||||||| ||| || Sbjct 25938 ATGATCTCTCCAGAGTCTTGAAGCCAAAGTA-TTGATAGTTGAAGTCTCTGTCGTAGACA 25996 Query 222653 ACGGCGGCGTCCAGCTCCGACTTGTGCTT 222681 | ||||| ||| |||||| |||||| || Sbjct 25997 ATGGCGGAGTCAAGCTCCTCCTTGTGTTT 26025 >seq521 Length=16305 Score = 122 bits (134), Expect = 2e-22 Identities = 294/449 (65%), Gaps = 9/449 (2%) Strand=Plus/Plus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| |||| || || |||||||||||||||||||| ||||||||| | ||||| | | Sbjct 13509 AGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGA 13568 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 | |||||||||||| || || |||||||| || ||| || ||||| || ||| Sbjct 13569 TTTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCT 13628 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056 | | || |||||| | |||| ||| ||||| || ||| | ||| || ||| | Sbjct 13629 CCCGTGATGAGGGTTTGCACACAGACTTTGCATGTCTG--TTGCACTCGCATCTTAAGCA 13686 Query 26057 ACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAG 26115 | | || |||| | | || | |||||||| || ||||| | |||||| | Sbjct 13687 CCGAGCC--AGCAAGCAAATTATCCAGGATATCATCACCGACGCTGTTGGCATCGAGCAA 13744 Query 26116 GAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGC 26175 ||||||| | ||||||||| || ||| |||| Sbjct 13745 GAGTTTCTGACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACTAATGAAG 13804 Query 26176 CAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGACTCT 26233 ||||| ||||| | ||| ||||| | || || ||| || || || | | | Sbjct 13805 CAATATATTGAATTTGTCGCCGATCGCCTATTGGTTGC--TCTTGGTAACGAAAAGGTAT 13862 Query 26234 ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACT 26293 ||| || | ||||| ||||| || ||||| ||||| || |||| || ||||| |||| Sbjct 13863 ACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGTAAGACAAACT 13922 Query 26294 TCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 |||| || ||| | || || || |||||| Sbjct 13923 TCTTCGAGAAGCGAGTTGGAGAATATCAA 13951 Score = 100 bits (110), Expect = 5e-16 Identities = 179/259 (69%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| || ||| |||||| ||||| ||||| |||||| Sbjct 13049 ATCTGGCAAATGTACAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAGGAGATCGATCTG 13108 Query 25537 GCCAAGGACATGGACGGCTGG---TACGCTCTATCCAAAGACGAGCAGCATTT--TCTCA 25591 |||||||| || ||| ||| || ||| | | |||||| | | || ||||| Sbjct 13109 TCCAAGGACTTGCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTCATCTCA 13168 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 || | |||||||||||||| || ||||| || || || || || || ||| ||| Sbjct 13169 --CACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACCTGCTTGAGC 13226 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| | | || || ||| |||||| || ||||| || || ||||| | Sbjct 13227 GTTTCAGCGGCGAGGTTCAGGTTCCGGAGGCTCGTTGCTTCTATGGATTTCAGATCATGA 13286 Query 25712 TCGAAAATGTGCACTCTGA 25730 | || ||| | |||||||| Sbjct 13287 TGGAGAATATTCACTCTGA 13305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928820487487360