Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15]
2,094 sequences; 34,423,103 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq65 203 2e-46
seq13 105 4e-17
>seq65
Length=104434
Score = 203 bits (224), Expect = 2e-46
Identities = 472/703 (67%), Gaps = 13/703 (2%)
Strand=Plus/Plus
Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546
||||| | |||||||| |||||||| ||||| || |||||||| |||| |||||
Sbjct 74832 CGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCATCCTCTCTTCTGCAGCTCAGACTACG 74891
Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606
|||| |||||||||| || || || || |||| | || | |||||| ||||
Sbjct 74892 ATTGAGATTGATTCTCTATTCGAGGGTATCGATTTCTACACCCCTATTACCCGGGCCCGT 74951
Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666
|| ||||| |||| ||||| || | || || | || || || | ||||||
Sbjct 74952 TTCGAAGAGCTTTGCCAGGATCTTTTCCGCTCCACCATCCAGCCTGTCGACCGTGTTCTC 75011
Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726
| || | || |||||||||| ||||| ||||| ||||| | || || ||||| ||
Sbjct 75012 ACTGACGCCAAGATTGACAAATCTCAAGTTCATGAGATTGTCTTGGTTGGTGGTTCCACC 75071
Query 475727 AGAATTCCAAAAATAAGAGAAATGCTT-TCATCATATTTTAATGGTAAAAAGTTAAATGA 475785
||||||| ||| ||||| | | || || || || || ||| || ||
Sbjct 75072 CGAATTCCCCGAATCC-AGAAACTCATCTCCGACTACTTCAACGGCAAAGAGCCCAAC-- 75128
Query 475786 AAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843
|||| || || |||||||||||||||||||| || || |||||||| || ||||| |
Sbjct 75129 AAGTCTATCAACCCTGATGAAGCTGTTGCATACGGTGCCGCTGTCCAGGCTGCTATCCTG 75188
Query 475844 TCAGGTCA---ATCAGACGAG-AAACTAA-ATAATATTGTACTTGTTGACGTAACTCCAC 475898
|| ||| | || | || ||||| ||| |||| | ||||||| | ||
Sbjct 75189 TCTGGTGACACTTCTTCCAAGTCTACTAACGAAATCTTGT--TGCTTGACGTCGCGCCTT 75246
Query 475899 TTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTC 475958
| || | ||| |||| || | || || || ||||| || || ||| | | || ||
Sbjct 75247 TGTCTCTGGGTATTGAGACCGCCGGTGGAATGATGACGAAGCTCATTCCCCGTAACACAA 75306
Query 475959 CTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAA 476018
| || ||| ||| || || | || || || || | |||||| || || | ||
Sbjct 75307 CCATTCCAACCAAGAAGTCTGAGGTTTTCTCGACCTTTTCTGACAACCAGCCTGGGGTGC 75366
Query 476019 CCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTT 476078
||| || ||||||| || || || | ||| || || || ||| | | || | |
Sbjct 75367 TCATTCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTAATGGGCAAGT 75426
Query 476079 TTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTG 476138
|| | ||| || ||||| || |||||| | || |||||||| ||||||||||| ||||
Sbjct 75427 TTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGCGTTCCTCAGATTGAAGTTACCTTTG 75486
Query 476139 ATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181
|| | ||||| |||||||| | ||||| ||||| ||| ||
Sbjct 75487 ATCTCGATGCCAATGGTATCATGAATGTGTCTGCTGTTGAAAA 75529
>seq13
Length=187677
Score = 105 bits (116), Expect = 4e-17
Identities = 159/221 (72%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609
||| ||||| || || ||||| | || ||||| || | || || || ||| || |
Sbjct 68413 ACGCAGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTC-GCTCAGTG 68355
Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669
| | | ||||| || |||||||| ||||||||||| ||||| || || ||||| ||||
Sbjct 68354 TGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTC 68295
Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728
| ||||| || |||||||| ||||||| || || ||||||| | | | || ||
Sbjct 68294 CCTCCTTATCCTGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCGACTTCCA 68235
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| ||| ||||| || || || | ||||| || ||||||||
Sbjct 68234 A-GGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTG 68195
Score = 100 bits (110), Expect = 2e-15
Identities = 130/177 (73%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653
|| || |||| ||||| | | || ||||| ||||||||||| || || ||||| ||
Sbjct 67613 TTGTAGTCAGAAAGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAGATCAGACGCTGC 67554
Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713
|| ||||| || ||||| |||||||| |||||||| |||||| ||||| ||||||
Sbjct 67553 TGGTCAGGGGGGATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATGGTATCA 67494
Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | | | || || || || || || |||||||| ||||| ||||| |||||
Sbjct 67493 GACGACTCGA-CCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 67438
Score = 95.1 bits (104), Expect = 8e-14
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
|| ||||| || || | ||| || ||| || || || ||| || || | | ||||
Sbjct 68184 CGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTT 68125
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| | ||| || || ||||| |||||||| || || || || || ||||| ||||| |||
Sbjct 68124 CGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCT 68065
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730
||||||||||||||||| || ||| || || ||||| | | | | || |||
Sbjct 68064 TCCTTGTCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACTTCCAA- 68006
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||||||| || || || | |||||| ||||| || ||
Sbjct 68005 TGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTG 67967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268089378179912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |