Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq65 203 2e-46 seq13 105 4e-17 >seq65 Length=104434 Score = 203 bits (224), Expect = 2e-46 Identities = 472/703 (67%), Gaps = 13/703 (2%) Strand=Plus/Plus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | |||||||| |||||||| ||||| || |||||||| |||| ||||| Sbjct 74832 CGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCATCCTCTCTTCTGCAGCTCAGACTACG 74891 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 |||| |||||||||| || || || || |||| | || | |||||| |||| Sbjct 74892 ATTGAGATTGATTCTCTATTCGAGGGTATCGATTTCTACACCCCTATTACCCGGGCCCGT 74951 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 || ||||| |||| ||||| || | || || | || || || | |||||| Sbjct 74952 TTCGAAGAGCTTTGCCAGGATCTTTTCCGCTCCACCATCCAGCCTGTCGACCGTGTTCTC 75011 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 | || | || |||||||||| ||||| ||||| ||||| | || || ||||| || Sbjct 75012 ACTGACGCCAAGATTGACAAATCTCAAGTTCATGAGATTGTCTTGGTTGGTGGTTCCACC 75071 Query 475727 AGAATTCCAAAAATAAGAGAAATGCTT-TCATCATATTTTAATGGTAAAAAGTTAAATGA 475785 ||||||| ||| ||||| | | || || || || || ||| || || Sbjct 75072 CGAATTCCCCGAATCC-AGAAACTCATCTCCGACTACTTCAACGGCAAAGAGCCCAAC-- 75128 Query 475786 AAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843 |||| || || |||||||||||||||||||| || || |||||||| || ||||| | Sbjct 75129 AAGTCTATCAACCCTGATGAAGCTGTTGCATACGGTGCCGCTGTCCAGGCTGCTATCCTG 75188 Query 475844 TCAGGTCA---ATCAGACGAG-AAACTAA-ATAATATTGTACTTGTTGACGTAACTCCAC 475898 || ||| | || | || ||||| ||| |||| | ||||||| | || Sbjct 75189 TCTGGTGACACTTCTTCCAAGTCTACTAACGAAATCTTGT--TGCTTGACGTCGCGCCTT 75246 Query 475899 TTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTC 475958 | || | ||| |||| || | || || || ||||| || || ||| | | || || Sbjct 75247 TGTCTCTGGGTATTGAGACCGCCGGTGGAATGATGACGAAGCTCATTCCCCGTAACACAA 75306 Query 475959 CTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAA 476018 | || ||| ||| || || | || || || || | |||||| || || | || Sbjct 75307 CCATTCCAACCAAGAAGTCTGAGGTTTTCTCGACCTTTTCTGACAACCAGCCTGGGGTGC 75366 Query 476019 CCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTT 476078 ||| || ||||||| || || || | ||| || || || ||| | | || | | Sbjct 75367 TCATTCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTAATGGGCAAGT 75426 Query 476079 TTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTG 476138 || | ||| || ||||| || |||||| | || |||||||| ||||||||||| |||| Sbjct 75427 TTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGCGTTCCTCAGATTGAAGTTACCTTTG 75486 Query 476139 ATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 || | ||||| |||||||| | ||||| ||||| ||| || Sbjct 75487 ATCTCGATGCCAATGGTATCATGAATGTGTCTGCTGTTGAAAA 75529 >seq13 Length=187677 Score = 105 bits (116), Expect = 4e-17 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| ||||| || || ||||| | || ||||| || | || || || ||| || | Sbjct 68413 ACGCAGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTC-GCTCAGTG 68355 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | ||||| || |||||||| ||||||||||| ||||| || || ||||| |||| Sbjct 68354 TGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTC 68295 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 | ||||| || |||||||| ||||||| || || ||||||| | | | || || Sbjct 68294 CCTCCTTATCCTGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCGACTTCCA 68235 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||| ||||| || || || | ||||| || |||||||| Sbjct 68234 A-GGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTG 68195 Score = 100 bits (110), Expect = 2e-15 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||| | | || ||||| ||||||||||| || || ||||| || Sbjct 67613 TTGTAGTCAGAAAGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAGATCAGACGCTGC 67554 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || ||||| || ||||| |||||||| |||||||| |||||| ||||| |||||| Sbjct 67553 TGGTCAGGGGGGATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATGGTATCA 67494 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || || || || || || |||||||| ||||| ||||| ||||| Sbjct 67493 GACGACTCGA-CCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 67438 Score = 95.1 bits (104), Expect = 8e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || || | ||| || ||| || || || ||| || || | | |||| Sbjct 68184 CGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTT 68125 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| || || ||||| |||||||| || || || || || ||||| ||||| ||| Sbjct 68124 CGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCT 68065 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 ||||||||||||||||| || ||| || || ||||| | | | | || ||| Sbjct 68064 TCCTTGTCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACTTCCAA- 68006 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||| || || || | |||||| ||||| || || Sbjct 68005 TGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTG 67967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268089378179912