Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq315 279 6e-70 >seq315 Length=31375 Score = 279 bits (308), Expect = 6e-70 Identities = 1159/1801 (64%), Gaps = 37/1801 (2%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 |||||||| |||| || || |||| || | ||||||| ||| | |||| | | Sbjct 25968 TACTTTGGCTTCAAGACTCTGGAGA-GATCATATCTTCTCAAACTCAACGGCAAGATTGT 25910 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 || || ||| ||||| | ||||| || || |||| || || || ||||||| Sbjct 25909 CGAGCGGCCCCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGA 25850 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 || |||||||| ||| || |||||| |||| | | ||| ||||| |||| Sbjct 25849 GCGCGTTTTGGAGACCTACCACCTCATGTCCAGCAAGCTTT--TCACCCACGCCTCACCT 25792 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 || |||||||| |||||||| || | ||| |||| || ||||| ||| || Sbjct 25791 ACACTCTTCAACGCTGGTACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTCGACATG 25732 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||| ||| || |||||||||| | ||||| | | ||||| ||||| ||| Sbjct 25731 AAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAG 25672 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502 |||||| || || || || || |||| | | || | ||| ||| Sbjct 25671 ATGGCTGGTGGAATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCC 25612 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || || || ||| ||| | || || ||||| ||||| ||||| || ||| ||| || Sbjct 25611 GGCACCAACGGTACATCCAACGGCATCATTCCCATGCTCCGCGTCTTCAACAACACTGCC 25552 Query 75563 CGCTATGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCATC-GCGGTCTACTTGGAA 75616 | || || | || ||| || |||| | || ||| || ||||| | || Sbjct 25551 AGATACGTTGACCA---GGGCGGTAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAG 25495 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676 || ||||| || || | | || || ||||| || ||| ||||| ||| | ||||| Sbjct 25494 CCTTGGCACGCAGACGTGTTCGACTTTCTTGATTTGCGAAAGAACCACGGTAAGGAAGAA 25435 Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736 || | | || ||||| | |||||||| ||||| || ||||||||||| || Sbjct 25434 AACCGTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTC 25375 Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GC 75795 || || || | ||| | || | ||||| || || || || || | || || Sbjct 25374 GAAAAGAACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGC 25315 Query 75796 GGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGC 75855 ||| ||||| ||||| || |||||| ||||||||| ||||| | | | Sbjct 25314 TATGGC-GAGGAATTTGAGGCTCTCTACGAAAAGTATGAGCGTGAGGGCCGTGGCCGCAA 25256 Query 75856 GACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914 |||| | | ||| | || | | ||| | | || ||| | || ||||| || || || | Sbjct 25255 GACTATTCGTGCC-CAGAAGCTCTGGTACTCGATCCTCGAGTCCCAGACCGAAACGGGCA 25197 Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974 || | |||||| ||||||||||| || |||| ||||| ||||| ||||| |||||| Sbjct 25196 ACCCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGGGAA 25137 Query 75975 CAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGG 76034 | || ||||| || || |||||||| || | |||||| | |||||| | Sbjct 25136 CCATTCGCAGCTCCAACCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGGTTG 25077 Query 76035 CTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGA-AGAGACTCGCACT 76093 |||||||||| ||||| || | ||||| || | ||| | | | ||| | || Sbjct 25076 CTGTTTGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGTCGACTACAAAGAAGGCCGCT 25017 Query 76094 TTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTC 76153 || | | | || || || || |||| | | || | || || ||| || Sbjct 25016 AC-GACTTTCAGAAGCTCCACGAGGTCACTCAAGTGGTCGTCCGTAACCTCAACAAGATC 24958 Query 76154 ATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213 ||||| || ||| ||| ||||| || || || || |||||||| |||| Sbjct 24957 ATTGATGTCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGACCC 24898 Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTT-TGTGCCGCTACGCATTTGA 76272 || ||| | |||||||| ||||| || || | ||| || | ||| | | | || || Sbjct 24897 ATCGGTGTTGGTGTTCAGGGTCTTGCTGACGCTTTTCTTGCTCTGCGCATGCCC-TTCGA 24839 Query 76273 TTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCT 76332 || || ||| ||| | || | ||||| || ||||| || ||||| | || Sbjct 24838 GTCTCCCGAGGCCCGTGAGCTCAACAAGCAGATCTTCGAGACCATCTACCACGCTGCACT 24779 Query 76333 GGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCC 76392 | || | ||| |||| ||| ||||| |||| || || |||| ||||| Sbjct 24778 GACAGCCTCTCTTGAGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGCTCTCC 24719 Query 76393 CGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACG- 76451 ||| || |||| | ||||| || || |||||| || || || || || | || | Sbjct 24718 CGCCTCGGAAGGTATTCTTCAATTCGACATGTGG-AATGTCAAGCCTT-CTGAGTTATGG 24661 Query 76452 -ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGA 76508 | ||||| ||| ||||| | ||||||||| | ||| |||| ||| || || || Sbjct 24660 GAGTGGGACAATCTGAAGGAGCAGATCAAGGAGCACGGTATTCGCAAC--TCGTTGCTGC 24603 Query 76509 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 76568 | || || ||||| || ||||| ||| | ||||| ||||||| ||||| |||||||| | Sbjct 24602 TCGCTCCCATGCCCACCGCCTCGACCTCGCAAATTCTGGGTAACAATGAGTGCTTTGAGC 24543 Query 76569 CATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACA 76628 ||||||| | ||||| |||| | | | | | || ||||| || | |||||| Sbjct 24542 CATACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAATTCCAGGTCGTCAACC 24483 Query 76629 AGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCA 76688 ||| |||| || ||| | || ||||||||||| | | |||||| | | || Sbjct 24482 CCTGGCTCCTCAAGGATCTCGTCGACATGGGTCTCTGGTCTGATGCCATGAAGAACCGCA 24423 Query 76689 TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATC 76748 | | | | |||||||||||| || ||| | ||||||| | || |||||| || Sbjct 24422 TCATTGCCGAGAATGGTTCCATTCAGAACATCCCCAATATCCCCGCCGACATCAAGGCTC 24363 Query 76749 TCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTG 76808 |||| || || ||||| || | |||| || | |||||||| ||||| | Sbjct 24362 TCTATAAGACTGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCGCCGATCGCG 24303 Query 76809 GTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTC 76866 || ||| || || | |||| ||| | || | |||| | ||| || ||| Sbjct 24302 GTGCCTTTATCGACC--AGTCCCAGTCGCTCAACGTTCACATGAAGGATCCTACTATGGG 24245 Query 76867 CAAGCTCTCTTCTATGCA-TATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACT 76925 |||| || | |||||||| | || || ||||| ||| ||||| || || ||||||| Sbjct 24244 CAAGATCACCTCTATGCACTTTGCTGGC-TGGAAGTTGGGTCTCAAGACGGGCATGTACT 24186 Query 76926 A 76926 | Sbjct 24185 A 24185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596553984790720