Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 8e-14 >seq13 Length=187677 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || |||||||||||||| | || || || || ||||| ||||| || ||||| || || Sbjct 68337 TGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGAATC 68278 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||| | ||| || ||||| ||||| || ||||| | || ||||| || || Sbjct 68277 TTGGATTTGACATTGTCGATGGTATCAGAAGATTCGACTTCCAAGGTGATAGTCTTTCCA 68218 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || | || || ||||| |||||||| Sbjct 68217 GTCAAGGTCTTGACAAAAATTTGCAT 68192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899630851546080