Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq13 116 5e-21 >seq13 Length=187677 Score = 116 bits (128), Expect = 5e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || |||||||| || ||||||||||| ||||||||| ||| Sbjct 67964 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTCGAATCTTCG 68023 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || ||| || ||||| || |||||||| || || || || Sbjct 68024 GATACGATCGATAATGTAAAGTCTAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 68083 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| |||||||||||||| ||| | ||||||| || || || ||| Sbjct 68084 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 68143 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| | || || ||||| || Sbjct 68144 ATTCAGAAGGAGTCTACTCTGCATTTGGT 68172 Score = 109 bits (120), Expect = 8e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||||||||| ||||| || || ||||||||| |||| Sbjct 68192 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTTCT 68251 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || ||| || || || ||||| || || || ||||| || || Sbjct 68252 GATACCATCGACAATGTCAAATCCAAGATTCAGGATAAGGAGGGAATCCCTCCCGACCAG 68311 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| || | |||| |||||| |||||||| ||||| Sbjct 68312 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGA 68346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731852843250400