Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq521 116 1e-20 seq29 105 2e-17 >seq521 Length=16305 Score = 116 bits (128), Expect = 1e-20 Identities = 320/488 (66%), Gaps = 8/488 (2%) Strand=Plus/Plus Query 133450 AAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCG 133509 ||| ||| | |||||||| ||| ||||| ||||||||| | | || || || || Sbjct 13453 AAAAAAAGCAGACTGGGCCATTCGTTGGATTCAGGACAAGGATTCCAGCTTCGCCCAGCG 13512 Query 133510 TCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTT 133569 | || ||||| |||| || |||||||| || ||||| ||||| || ||| ||||| Sbjct 13513 CTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATTTT 13572 Query 133570 TTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAG 133629 ||||| || ||||||||| | | || || || || |||||||||||||| || | Sbjct 13573 CTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCTCCCG 13632 Query 133630 GGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAATTAGAGCGACCACT 133689 || |||| | ||||| || ||||| | | | ||||| | | ||| | | Sbjct 13633 TGATGAGGGTTTGCACACAGACTTTGCATGTCTGTTGCACTCGCATCTTAAGCACCGAGC 13692 Query 133690 CAAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTAT 133749 || ||| | | || | || || || | || || |||| || ||| || ||| | Sbjct 13693 CAGCAAGCAAATTATCCAGGATATCATCACCGACGCTGTTGGCATCGAGCAAGAGTTTCT 13752 Query 133750 CAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTGATGCAGCGTTATAT 133809 | ||||||||||| | | | || ||||| | || ||| ||| ||||| Sbjct 13753 GACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACTAATGAAGCAATATAT 13812 Query 133810 TGAATTTGTAGCTGA---CAGATTGGCCGTTCAGTTAGGTGGGGATAAGATTTACGGTTC 133866 ||||||||| || || | ||||| | || | ||| || ||| | ||| | Sbjct 13813 TGAATTTGTCGCCGATCGCCTATTGGTTGCTC---TTGGTAACGAAAAGGTATACAAAAC 13869 Query 133867 CGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGACTAATTTCTTCGA 133926 |||||| || ||||| | ||||||| |||| | | | ||||| || |||||||| Sbjct 13870 CGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGTAAGACAAACTTCTTCGA 13929 Query 133927 G--GCGAG 133932 | ||||| Sbjct 13930 GAAGCGAG 13937 >seq29 Length=152620 Score = 105 bits (116), Expect = 2e-17 Identities = 220/324 (68%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 302497 CCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTA-TTTCTTACGGTCATATC 302555 || || ||||| || | |||||||||| | | || | | |||| || ||| ||| Sbjct 5616 CCATCTTCGCCATACAAGAACTGAATGATATC-TCCTAATGAGTTTCGCACAGTCCCATC 5674 Query 302556 ATAAC---CAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||| || ||| | ||||| | | ||||| | || |||||||| || ||||| Sbjct 5675 ATAACGTGCACTCAAA---TCTTCAAGAGCCTTGACCAGTCGTCGCTGAATGTATCCAGT 5731 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | | || || ||||| || || || ||||| | || ||| |||| || |||||||| Sbjct 5732 TTCGGCAGTCTTGACAGCAGTGTCGATAAGACCTTCTCGTCCAGCCATGGCGTGGAAGAA 5791 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | ||| || || || | | | ||||| | || |||||||||||||| ||||| Sbjct 5792 AAACTCGGTAGGAGTGAGGCCACGGAGATAGGAGTTTTCGACGAAACCACGCGCTTCGGG 5851 Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACG 302792 || | |||| ||| ||||| || |||| || | || | |||| |||| ||||| Sbjct 5852 TGAGTAGTCGTCCTTTGTAAAATGCGGCAATGTTCGGTATTTGAAGCCAAATGGAATACG 5911 Query 302793 CTTTCCATCAACGTTCTGCTGTCC 302816 || || || || ||||||| || Sbjct 5912 TTTGCCTTCCACAATCTGCTGACC 5935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471778112053678