Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq315 150 2e-30 seq30 131 2e-24 seq132 109 7e-18 seq521 102 1e-15 seq29 86.0 8e-11 >seq315 Length=31375 Score = 150 bits (166), Expect = 2e-30 Identities = 270/393 (69%), Gaps = 15/393 (4%) Strand=Plus/Plus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| ||||| | || |||| ||| ||||||||||||||||| | || |||||| Sbjct 25534 GCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAATGATGCCGTT 25593 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| ||||||||||| || | ||| | ||||| || || | ||| || || Sbjct 25594 GGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAA 25653 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 |||||| || || ||| ||||||||| | || || ||||| ||||||||||| || Sbjct 25654 GCCGATTCCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACC 25713 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 || || |||| |||||||||| || || || || || || || || | || Sbjct 25714 GTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACATTGGGGGGT 25773 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 || ||||||||||| || || | || |||||| | || | |||||| || ||| Sbjct 25774 ACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAAAGCTTGCTGGACATGAGGTGGTA 25833 Query 1630362 GGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGC 1630421 ||| | | |||||| | | | ||| || ||| ||| |||| || Sbjct 25834 GGTCTCCAAAACGCGCTCAA---TGTTGTC----TCCCCAA----ATA----CCGACCGC 25878 Query 1630422 GACGCGCATGAGCATGTACTGGGGCCGCTCGAC 1630454 |||||||| | ||||| ||||||||||||||| Sbjct 25879 AACGCGCATAATCATGTGCTGGGGCCGCTCGAC 25911 Score = 100 bits (110), Expect = 3e-15 Identities = 283/437 (65%), Gaps = 10/437 (2%) Strand=Plus/Plus Query 1628169 GATCTCGGTGCACAGGTTGGC-CGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCA 1628227 |||||| ||||||||||||| | || | || |||||||||| ||||||| | | Sbjct 25105 GATCTCCGTGCACAGGTTGGAGCTGCGAA-TGGTTCCCAGGTTCTTCTGGTTGCTCTTTC 25163 Query 1628228 GGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGA 1628287 |||| ||| ||||||| ||||| |||| ||| || ||| |||| | | ||| || Sbjct 25164 TGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAGGA 25223 Query 1628288 TGGCCGACCAGATCTGGCGCGCGGGCACGAC-AGTCC-GCG--CGCGGCCCTNNNNNNNN 1628343 | | |||||| || | ||||||| |||| ||| | ||||||| Sbjct 25224 TCGAGTACCAGAGCTTCTG----GGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTCA 25279 Query 1628344 NNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCG 1628403 ||||| || |||| ||||| || |||||| || |||| Sbjct 25280 TACTTTTCGTAGAGAGCCTCAAATTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCG 25339 Query 1628404 GACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACAC 1628463 ||||| | ||| | ||| || || | | |||| ||| ||||| || Sbjct 25340 TTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGG 25399 Query 1628464 GTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTG 1628523 ||||||| || ||||||||||| || ||||| || ||||| |||||||||||| Sbjct 25400 ATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTACCGTGGTTCTTTCGC 25459 Query 1628524 AGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCC 1628583 | || || |||||| | ||| |||||||| ||||| |||||| |||||| || || Sbjct 25460 AAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCA 25519 Query 1628584 TTGCGCTTGCCGCCGCC 1628600 |||||| ||||| Sbjct 25520 GGTCGCTTGTTACCGCC 25536 >seq30 Length=151616 Score = 131 bits (144), Expect = 2e-24 Identities = 92/105 (88%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||||||||||||||| || || ||| |||| |||||| | ||||||||||||| Sbjct 135003 CCAACTACCTCGACATCAAGCCCCTACTTGATGTTGGCTGCAAGACGGTGGCCAACATGA 135062 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 | ||||||||||| ||||| || ||||||||||| || ||||||| Sbjct 135063 TTAAGGGCAAGTCACCCGAAGAAATCCGCAAGACTTTCAACATCA 135107 >seq132 Length=64029 Score = 109 bits (120), Expect = 7e-18 Identities = 255/379 (67%), Gaps = 12/379 (3%) Strand=Plus/Minus Query 18120 CGTCGGCTGCATCATCGACGGCGTGCCG--CCGTGCATGCCACTGGCCGAGGCCGACATC 18177 |||| ||||||||||||| | |||| ||| | |||| || | ||| | |||||| Sbjct 26599 CGTCTCCTGCATCATCGACAAC-TGCCCTCCCGGTCTTGCC-CTCGTCGAAGATGACATC 26542 Query 18178 CAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAG 18237 ||||| || | | || ||||| ||||||||| || | | || || |||||||| Sbjct 26541 CAGCCGCAACTCAACCGCCGCCGGCCGGGCCAGTCGGCCATAACGACACCCCGCAACGAA 26482 Query 18238 CCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTC 18297 || |||| |||||| || ||||| ||| |||| ||||| ||| ||||| | Sbjct 26481 AAAGACAAGGTCACCATCCACTCTGGCACCGAGTTCGGCAAGACGCTAGGCACGCCCATT 26422 Query 18298 GGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGG-- 18355 ||| || ||||| ||||| |||||| ||||| ||||| | | | Sbjct 26421 TTGCTCACGGTCCCCAACGAAGACCAACGGCCCAAGGACTACGGCGACAAGACGATCGAT 26362 Query 18356 ---TGCCGCGGCCCTCA--CACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGC 18410 | || | |||| || |||||||||| || || | | |||||||||| ||||| Sbjct 26361 CTCTACCCCCGCCC-CAGCCACGCCGACTGGACATATCTCGAAAAGTACGGCACAAAGGC 26303 Query 18411 GTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGC 18470 || ||||| ||| || ||||||||||| || || || ||||||||||| Sbjct 26302 CAGCTCCGGCGGCGGCAGGAGCAGCGCCCGCGAGACAATCGCCCGTGTGGCCGCCGGCGC 26243 Query 18471 GGTCGCCGAGAAATGGCTC 18489 |||||||| || |||||| Sbjct 26242 CGTCGCCGACAAGTGGCTC 26224 Score = 102 bits (112), Expect = 1e-15 Identities = 118/155 (76%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 19040 CCAAGAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCT 19099 |||| | ||||||| ||||||||| ||||| ||||| ||||||| || | || || Sbjct 26011 CCAACACGACAGCACCGGCGGCACCGTGACCTGCGTTATCCGCAACGCCCCCTCTGGTCT 25952 Query 19100 CGGCGAGCCGTGCTTT-GACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCC 19158 ||||||||| ||| || || ||| |||| ||| ||| ||||||||||| || |||| Sbjct 25951 CGGCGAGCC-TGCGTTCGATAAGCTCGAAGCCCTCATCGGGCACGCCATGCTCTCCATCC 25893 Query 19159 CGGCCACCAAGGGATTCGAGATTGGCAGCGGGTTT 19193 | ||| |||||| ||||| || ||| ||||||| Sbjct 25892 CCGCCGTCAAGGGCTTCGAAATCGGC-TCGGGTTT 25859 >seq521 Length=16305 Score = 102 bits (112), Expect = 1e-15 Identities = 168/241 (70%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 || || || || ||| |||||| ||||| ||||| || | | || || |||||| Sbjct 13947 TATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTACCACCCAAGGAAATGTTCTCCATG 13888 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 | ||| ||||||| || ||||| ||||||| || || | | | ||||| Sbjct 13887 AAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAAGAGCAACCAATAGGCGA 13828 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 ||||||||||| || || || || ||| || |||||||||||| | ||| || | Sbjct 13827 TCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATGCCTAGGAGAGCACAC 13768 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTG 868939 ||||| | |||| ||| |||||||| |||||| | || || ||| |||||| | |||| Sbjct 13767 GGCAGAGCCTCGGTCAGAAACTCTTGCTCGATGCCAACAGCGTCGGTGATGATAT-CCTG 13709 Query 868940 G 868940 | Sbjct 13708 G 13708 >seq29 Length=152620 Score = 86.0 bits (94), Expect = 8e-11 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 507638 AACCGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATGCA-CAAGGTGGTGCCCATGCC 507696 ||||| ||||| ||| |||||| || |||||| | || | | | ||| | ||||| Sbjct 6910 AACCGTCAGCCCTCGTTGCACAAGGAGTCCATGATGGGTCATCGTGTTCGTGTC-ATGCC 6852 Query 507697 CGGGCGCACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGG 507756 | ||| | || || ||||| |||| || ||||||||||||| || || || Sbjct 6851 CTACTCTACCTTCCGCTTGAACCTTTCCGTTACTTCACCCTACAACGCCGATTTCGATGG 6792 Query 507757 CGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGT 507807 |||||||||||| ||||||| ||||| |||||| | |||| || ||||| Sbjct 6791 TGACGAGATGAACTTGCACGTTCCCCAATCCGAGGAGACGCGTGCGGAGGT 6741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106967356553798