Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq315 219 4e-52 seq13 104 2e-17 >seq315 Length=31375 Score = 219 bits (242), Expect = 4e-52 Identities = 1065/1676 (64%), Gaps = 60/1676 (4%) Strand=Plus/Plus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATAT-GTCGCGG-TATTGTTGCAATATTTT 138415 |||||||| || ||||| || ||| | || | | || || ||||| | || || | Sbjct 24341 ATCTCCCAAACAGTCTTATAGAGAGCCTTGATGTCGGCGGGGATATTGGGG--ATGTTCT 24398 Query 138416 GAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACT 138475 ||||| || || | ||||||||||| || ||||| |||| | ||| || | Sbjct 24399 GAATGGAACCATTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACCAGAGACCCATGT 24458 Query 138476 TGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGAC 138535 || | || || | || | ||| | |||||| |||||||| ||||| || || | Sbjct 24459 CGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGC 24518 Query 138536 GAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCG 138595 | |||||||||| ||| | |||||||| | || ||||| |||||||| || | | Sbjct 24519 GCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGG 24578 Query 138596 TGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTC 138655 | | ||||| |||||| || | || | || || || | |||||| |||||| Sbjct 24579 TCGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTCCTTGATCT 24638 Query 138656 GTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715 | ||||| || ||| ||||| || || ||| || |||||||| ||| | | Sbjct 24639 GCTCCTTCAGATTGTCCCACTCCCATAACTCAGAAGGCTTGACATTCCACATGTCGAATT 24698 Query 138716 GTA----ACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCT 138771 | | || |||| | |||||| ||| | | | | | ||| || |||| Sbjct 24699 GAAGAATACCTTCCGAG----GCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCT 24754 Query 138772 TGCGCCAACTC----GTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTG 138827 | |||| ||| | ||| | || ||| | | ||| || || ||| ||||| Sbjct 24755 TTGGCCAGCTCAAGAGAGGCTGTC----AGTGCAGCGTGGTAGATGGTCTCGAAGATCTG 24810 Query 138828 CTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAAC-GCGT 138886 || |||||| |||||||||| |||| | |||||||| || | | ||| |||| Sbjct 24811 CTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGT 24869 Query 138887 CGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGG 138946 | || || || || || || || |||| || ||||| |||| || ||| ||||| Sbjct 24870 CAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTT----GCTGTTGCGA 24925 Query 138947 ----CTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACC 139002 | || || || |||| ||| ||||| ||||| ||||| | || || |||||||| Sbjct 24926 GCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTTACGGACGACCACT 24985 Query 139003 TTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTC 139061 | ||| | | | | | | | ||| ||||| ||| | |||| |||||||| | | Sbjct 24986 TGAGTGACCT-CGTGGAGCTTCTGAAAGTCGTAGCGGCCTTCTTTGTAGTCGACGAAGGC 25044 Query 139062 -GACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGC 139120 | || | || | ||||| | |||||| || || || || || ||| | | Sbjct 25045 AGGCAG-------GGCAAGA---GAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCAC 25094 Query 139121 TGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGAT 139180 ||| || | || || | |||| || | || || || | || | || | Sbjct 25095 AGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGT 25154 Query 139181 TGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTG 139240 |||| |||| ||| || ||||| ||||| |||||| | || |||| ||||| || | Sbjct 25155 TGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGG 25214 Query 139241 TCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTAT----TTGACGCACGTAAAGTTCG 139296 ||| | || | | | | | | || | || ||| || | | | Sbjct 25215 ACTCGAGGATCGAGTACCAGAGCTTCTGGGCACGAATAGTCTTGCGGCC----ACGGCCC 25270 Query 139297 TCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCG 139356 || ||||| |||||||||||||| | || ||| || || ||| |||| || | Sbjct 25271 TCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCTCGCCATAGCAATCAGCCAGGCCA 25330 Query 139357 CGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAAC 139416 | |||| || ||||||||||| | ||| | |||||| | ||||||| ||||||| Sbjct 25331 GGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAG 25390 Query 139417 AGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATG 139476 ||||| || ||||||| ||| | | | ||||| || || |||||| ||| | Sbjct 25391 AGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTACCGTGG 25450 Query 139477 TTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCC 139536 || | || | ||| || || || ||||| |||||||| || || || |||||||| Sbjct 25451 TTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCA 25510 Query 139537 ATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACG 139593 | ||| || || ||| || || || || |||| || ||| || ||||| ||| Sbjct 25511 AATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACG 25570 Query 139594 CGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATGGGACTGTTGC 139651 || | ||| || | ||| | | ||| |||||||||| ||| ||| | | | Sbjct 25571 CGGAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGC--CGGCAATGTAAGAGCCGG 25628 Query 139652 GAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGC 139711 ||| |||| | || || || | ||||||||| || | | ||||| || | | | Sbjct 25629 TAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCATGGCAC 25688 Query 139712 A-ATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAG 139770 | || | | || ||||| ||||| ||||||||||||| ||| ||| || || Sbjct 25689 AGGTCTTG-AGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAA 25747 Query 139771 CATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTG 139830 || || || || || | | || || || || || ||||| ||||| ||| Sbjct 25748 CAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTG 25807 Query 139831 AACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGG 139890 || | | | ||||| | | ||| || || | ||| | |||| | ||| Sbjct 25808 AAAAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATGTTGTCTCCCCAA 25867 Query 139891 ATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtt 139950 |||||||| | || ||||| | ||| || ||| ||| ||| | | | ||| | || | Sbjct 25868 ATACCGACCGCAACGCGCATAATCATGTGCTGGGGCCGCTCGACAATCTTGCCGTTGAGT 25927 Query 139951 tttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || ||||| |||| || |||||| |||||||||| ||||||||| || Sbjct 25928 TTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAGTC 25983 >seq13 Length=187677 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || |||||||| | ||||| ||| | | Sbjct 67964 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTCGAATCTTCG 68023 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| ||||| |||||||| ||||| || || || || || Sbjct 68024 GATACGATCGATAATGTAAAGTCTAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 68083 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || ||||| |||||| ||| |||| || || || Sbjct 68084 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 68143 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || || ||||| |||| |||| || || Sbjct 68144 ATTCAGAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTGCGGGGTGG 68190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449885823930320