Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq30 127 3e-23 seq521 113 7e-19 seq315 107 3e-17 >seq30 Length=151616 Score = 127 bits (140), Expect = 3e-23 Identities = 91/105 (87%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||||||||||||||||||||| || ||| | || |||||||| ||||||||| | | Sbjct 135003 CCAACTACCTCGACATCAAGCCCCTACTTGATGTTGGCTGCAAGACGGTGGCCAACATGA 135062 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | ||||||||||| ||||| || ||||||||||| || ||||||| Sbjct 135063 TTAAGGGCAAGTCACCCGAAGAAATCCGCAAGACTTTCAACATCA 135107 >seq521 Length=16305 Score = 113 bits (124), Expect = 7e-19 Identities = 185/259 (71%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||| ||| || || || ||| |||||| ||||| ||||| || | | Sbjct 13962 ACGCCAGCCTTTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTACCACCCAAG 13903 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GA 794010 || || |||||| | ||| |||||||| || ||| ||| ||| || || Sbjct 13902 GAAATGTTCTCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAAGA 13843 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 || || ||| ||||| |||||||| |||||||| || || ||| || | |||||||| Sbjct 13842 GCAAC-CAAT-AGGCGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCA 13785 Query 794071 TGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||| | ||| || ||| ||||| | |||| | | |||||||| |||||| | || || Sbjct 13784 TGCCTAGGAGAGCACAC-GGCAGAGCCTCGGTCAGAAACTCTTGCTCGATGCCAACAGCG 13726 Query 794130 TCGATGATGATCTGCCTGG 794148 ||| ||||||| | ||||| Sbjct 13725 TCGGTGATGATAT-CCTGG 13708 >seq315 Length=31375 Score = 107 bits (118), Expect = 3e-17 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || || | || |||| ||| ||||||||||||||||| | | |||||| Sbjct 25534 GCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAATGATGCCGTT 25593 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| ||||||||||| || | ||| | ||| | || || | ||| || || Sbjct 25594 GGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAA 25653 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 |||||| || || ||| ||||||||| | || || | || || || |||||||| || Sbjct 25654 GCCGATTCCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACC 25713 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGA 2073758 || || |||| |||||||||| | || || || || || Sbjct 25714 GTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGA 25755 Score = 96.9 bits (106), Expect = 5e-14 Identities = 282/438 (64%), Gaps = 12/438 (3%) Strand=Plus/Plus Query 2071581 GACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 || ||| ||||||||||||| | || |||| |||||||||| ||||||||| | Sbjct 25105 GATCTCCGTGCACAGGTTGGAG--CTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTT 25162 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 |||| ||| ||||||| |||||| |||| ||||| ||| |||| | | || | Sbjct 25163 CTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAGG 25222 Query 2071699 ATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCG----CGGCCCTNNNNNNN 2071754 || | |||| | || |||||| | || ||| ||||||| Sbjct 25223 ATCGAGTACCAGA----GCTTCTGGGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTC 25278 Query 2071755 NNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTC 2071814 |||| || ||||| | |||| | ||| || |||||| || ||| Sbjct 25279 ATACTTTTCGTAGAGAGCCTCAAATTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTC 25338 Query 2071815 GGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCA 2071874 | || || | ||| | ||| || ||| | | ||||| ||| || || || Sbjct 25339 GTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGG 25398 Query 2071875 CGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTT 2071934 ||||||| | ||||| ||||| || ||||| || ||||| |||||||||||| Sbjct 25399 GATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTACCGTGGTTCTTTCG 25458 Query 2071935 CAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 2071994 || || || |||||| | ||| |||||||| ||||| |||||| |||||| || || Sbjct 25459 CAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACC 25518 Query 2071995 CTTGCGCTTGCCGCCGCC 2072012 |||||| ||||| Sbjct 25519 AGGTCGCTTGTTACCGCC 25536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916023651669266