Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq13 127 1e-24 seq104 120 2e-22 seq54 111 1e-19 >seq13 Length=187677 Score = 127 bits (140), Expect = 1e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| ||||||||| ||||| ||||| || || |||| | || Sbjct 67646 AGAACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCGTCC 67587 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| ||||||||||| || |||||||| | || | ||||||||||| Sbjct 67586 TCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCC 67527 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | || | ||| | |||||| || | || |||||| Sbjct 67526 TGAATCTTCGACTTGACATTGTCAATGGTATCAGACGACTCGACCTCGAGAGTGATGGTC 67467 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || || ||||||||||| || ||||| |||||||| Sbjct 67466 TTGCCGGTGAGGGTCTTGACGAAGATTTGCATGAT 67432 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 34781 GTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCG 34840 ||||| |||||||| ||||| ||||| || |||| | || ||||| ||||||||| Sbjct 68388 GTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGGCCGTCTTCCAGCTGCTTTCCG 68329 Query 34841 GCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTG 34900 || || || |||||||||||||| | || | |||||||| || | || || |||| Sbjct 68328 GCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGATTTG 68269 Query 34901 ACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAG 34956 || || | ||||| ||| | ||||| || | ||| || |||||||| || | Sbjct 68268 AC--AT--TGTCGATGGTATCAGAAGATTCGACTTCCAAGGTGATAGTCTTTCCAGTCAA 68213 Query 34957 GGTCTTTACAAAGATCTGCAT 34977 |||||| ||||| || ||||| Sbjct 68212 GGTCTTGACAAAAATTTGCAT 68192 Score = 100 bits (110), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 8/206 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| |||||||| || || ||||| || ||| | || |||| Sbjct 67947 AGTACGAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGACCATCT 67888 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || |||||||||| ||| ||||| || | || | || ||||| || Sbjct 67887 TCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTCCTTATCC 67828 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || |||||| || | ||||| || || |||||| |||| ||| || Sbjct 67827 TGAATCTTCGATTTGAC--AT--TGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGAT 67772 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAA 34967 ||||||||| || | ||||| |||| Sbjct 67771 GGTCTTTCCAGTCAAAGTCTTGACAA 67746 >seq104 Length=76965 Score = 120 bits (132), Expect = 2e-22 Identities = 158/217 (73%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||||||||||||||| ||||| ||||| ||| | || |||| Sbjct 66887 CAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGGCCATC 66828 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || ||||| |||||||||||||| | || | ||||||||||| Sbjct 66827 CTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTC 66768 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| || | ||||| || | ||| || |||| ||| | Sbjct 66767 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGA 66712 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||||| ||||||||||| || || || |||||||| Sbjct 66711 TTGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 66675 >seq54 Length=115083 Score = 111 bits (122), Expect = 1e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||||||||| ||||| || ||| | || | || || || ||||| || ||||||| Sbjct 30704 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 30763 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||| |||||||| | || | ||||||||||| | ||||| ||||| Sbjct 30764 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 30823 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| |||| ||| |||||||| ||||| || ||||| || | Sbjct 30824 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGA 30883 Query 34968 A 34968 | Sbjct 30884 A 30884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325684488116186