Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq65 131 1e-24 >seq65 Length=104434 Score = 131 bits (144), Expect = 1e-24 Identities = 452/696 (65%), Gaps = 17/696 (2%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||| | |||| |||||| | |||||||||||||| | |||||| || |||||||| Sbjct 75529 TTTTCAACAGCAGACACATTCATGATACCATTGGCATCGAGATCAAAGGTAACTTCAATC 75470 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTA--T 281534 ||||| || || | |||| || || || || | | ||| | |||| ||| | Sbjct 75469 TGAGGAACGCCACGGGGAGCGGGGGGAATGCCAGTAAGCTCAAACTTGCCCA--TTAGGT 75412 Query 281535 TATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGAT 281594 | || || || ||| | ||| || ||||| || | || || || ||| || | Sbjct 75411 TGTTGTCCTTGGTGCGCTGTCGCTCGCCCTCAAAGACCTGAATGAGCACCCCAGGCTGGT 75352 Query 281595 TATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAA 281654 | || ||| | || | || || || || || ||||| |||||||| | || Sbjct 75351 TGTCAGAAAAGGTCGAGAAAACCTCAGACTTCTTGGTTGGAATGGTTGTGTTACGGGGAA 75292 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 | | || ||||| || ||||| || || || | ||| ||||| | ||| | ||| |||| Sbjct 75291 TGAGCTTCGTCATCATTCCACCGGCGGTCTCAATACCCAGAGACAAAGGCGCGACGTCAA 75232 Query 281715 CTAGGACAATATTTTGA-AGT----TTTTCATCAGTTTGACCAACAAGAATAGCTGCTTG 281769 | |||| |||| | ||| || | ||| | |||| || ||||| || || Sbjct 75231 GCA--ACAAGATTTCGTTAGTAGACTTGGAAGAAGTGTCACCAGACAGGATAGCAGCCTG 75174 Query 281770 AATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACC 281829 | ||| ||||| |||||||||||||||||||| || | || | || | | ||| || Sbjct 75173 GACAGCGGCACCGTATGCAACAGCTTCATCAGGGTTGATAGACTTGTTGGGCTCTTTGCC 75114 Query 281830 ATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTA 281888 ||||| | | || | |||| ||| | ||||| || | || || ||||| | Sbjct 75113 GTTGAAGTAGTCGGAGATGAGTT-TCTGGATTCGGGGAATTCGGGTGGAACCACCAACCA 75055 Query 281889 ATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGG 281948 | ||||| ||||| || || ||||| || | || | || | ||| || || | Sbjct 75054 AGACAATCTCATGAACTTGAGATTTGTCAATCTTGGCGTCAGTGAGAACACGGTCGACAG 74995 Query 281949 GTTCAA--GACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAG 282006 | | | | ||| ||| | || ||||| |||||||| || | |||| Sbjct 74994 GCTGGATGGTGGAGCGGAAAAGA--TCCTGGCAAAGCTCTTCGAAACGGGCCCGGGTAAT 74937 Query 282007 AGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGA 282066 || | | |||| || || ||||| | |||||||| ||||||||||| |||| | Sbjct 74936 AGGGGTGTAGAAATCGATACCCTCGAATAGAGAATCAATCTCAATCGTAGTCTGAGCTGC 74877 Query 282067 AGAAGATAGTGCACGTTTAGCACGTTCACATGCTGT 282102 |||||| || || || |||||||| || || || Sbjct 74876 AGAAGAGAGGATGCGCTTGGCACGTTCGCAAGCAGT 74841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740527593449244