Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq315 257 2e-63 seq104 114 1e-20 seq54 111 2e-19 seq13 102 8e-17 seq521 91.5 1e-13 >seq315 Length=31375 Score = 257 bits (284), Expect = 2e-63 Identities = 998/1548 (64%), Gaps = 59/1548 (4%) Strand=Plus/Plus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || ||||| || || || || | || || ||| | || | |||| ||| | || Sbjct 24485 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 24544 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 ||||| |||| ||||| |||| ||| |||| ||||| || ||||||||| || | | Sbjct 24545 TCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTCGAGGCGGTGGGCATGGGAGCGAGC 24604 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 |||| ||||||||| | |||| | | || || | ||||||| |||| ||||| Sbjct 24605 AGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCAT 24664 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499 | | || || | || |||||||||||| | || ||||| || ||||| | Sbjct 24665 AACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAG 24724 Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCT-CGAGCGC 148558 |||| | | | ||| || || ||| | ||||| || || | || || || Sbjct 24725 CCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTC-AAGAGAGGCTGTCAGTGC 24783 Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCG---CTTTC 148615 ||| ||| || |||||| || ||| |||||||| | | | | |||| || Sbjct 24784 AGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGC-TCACGG--GCCTCGGGAGACTC 24840 Query 148616 GTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGG 148675 | | ||||| ||||| | ||| ||||| ||||| ||||| || || || || ||||| Sbjct 24841 GAAGGGCATGCGCAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGATGGG 24900 Query 148676 CCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATGAT 148735 || ||| |||||| | ||| || ||| | || || |||||| || ||||| Sbjct 24901 TCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGAT 24960 Query 148736 CTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA--- 148792 ||||| || || || || ||||| | || | | | ||| | ||| ||||| Sbjct 24961 CTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGAAAGTCGTAGCG 25020 Query 148793 ------CTTGTCATCTACG-ATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGG 148845 |||| || ||| | ||| || || ||| | |||||| | ||||| || | Sbjct 25021 GCCTTCTTTGTAGTCGACGAAGGCA--GG--CAGGGCAAGAGAGGCCAAGTTGCAAACAG 25076 Query 148846 CCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATT---GCTGCATTTGA 148902 | |||||| ||||| | |||||| | |||||| | |||||| || ||||| || Sbjct 25077 CAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGG 25136 Query 148903 TCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACG 148962 | |||| |||||| || |||||||| |||||||| || |||||||||||||| | | Sbjct 25137 T---TCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGG 25193 Query 148963 GTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCGCGCGCA 149019 | ||| ||||| ||| | || | || | ||| || | ||| || || | Sbjct 25194 GGTTGCCCGTTTCGGTCTGGGACTCGAGGATCGAGTACC---AGAGCTTCTGGGCACGAA 25250 Query 149020 ----CTTGCTGCTCGTAGCGACCCTCCTGCTCGTA--TAAAGTATACAGCCGCTCGAACG 149073 ||||| || || ||||| |||| || | ||| | ||| ||| || Sbjct 25251 TAGTCTTGCGGC----CACGGCCCTCACGCTCATACTTTTCGTAGAGAGC--CTCAAATT 25304 Query 149074 CCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGC 149133 ||||||| |||||||| | || || ||||||| || || |||||||| | ||| | | Sbjct 25305 CCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCC 25364 Query 149134 CGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGC 149193 ||| | | ||||||||||| || ||||| || | ||| || || | |||||||| Sbjct 25365 CGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGC 25424 Query 149194 GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCG 149253 | || | ||||| || ||| |||| | || | | ||| | ||| | Sbjct 25425 GAGCACGGTTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTG 25484 Query 149254 CGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGTCGA 149310 ||||||| ||||| | ||| | || | || || |||||| ||||||||||| | Sbjct 25485 CGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAA 25544 Query 149311 CGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGT 149370 ||| | | ||||||| || || || | ||| || ||||| ||| || |||| Sbjct 25545 CGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAATGATGCCGTTGGATGTACCGT 25604 Query 149371 TAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGC 149430 | || | |||| | |||| || || | ||| ||||| | |||||| || | Sbjct 25605 TGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCAC 25664 Query 149431 C-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTG 149489 | ||| | ||| ||||| || ||| ||| || |||||| || || |||||| Sbjct 25665 CAGCCAT-CTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTG 25723 Query 149490 TCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAA---ACGCGTGCCGGCC 149546 ||| ||||||| | || || || || ||| || || | | || || || Sbjct 25724 TCGTCCTTCATGTCGACTAGGAAACAGGAAGACA---GCTGACATTGGGGGGTACCAGCG 25780 Query 149547 GCGAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTC 149605 ||| | || || |||||| || |||| || |||| ||| | | ||| | ||| Sbjct 25781 TTGAAGAGTGTAGGTGAGGCGTGGGTGAAAAGCTTGCTGG-ACATGAGGTGGTAGGTCTC 25839 Query 149606 GAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTG 149665 | ||||| || |||| || || || || | || |||||||| | ||| ||||| Sbjct 25840 CAAAACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTG 25899 Query 149666 CGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTA 149725 || ||||| | | ||| | |||||| | || | || || |||||| | Sbjct 25900 GGGCCGCTCGACAATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAA 25959 Query 149726 GCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 ||||||||| | |||| ||||| | | ||| | ||||||||| ||| Sbjct 25960 GCCAAAGTATTGATAGTTGAAGTCTCTGTCGTAGACAATGGCGGAGTC 26007 >seq104 Length=76965 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||| ||| ||||| || ||||| |||| || || | | | |||||||| Sbjct 66880 AAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGGCCA-TCCTCGAG 66822 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || || || |||||||| || || ||||| |||||||| ||| Sbjct 66821 CTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGAT 66762 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||||| | |||||| || | ||||| || || || Sbjct 66761 CTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATTGTCTTCCC 66702 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||||||||| Sbjct 66701 CGTGAGGGTTTTGACGAAAATCTGCAT 66675 >seq54 Length=115083 Score = 111 bits (122), Expect = 2e-19 Identities = 145/197 (74%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| ||| || || ||| |||||| ||||||||||| ||| | || Sbjct 30706 TTCTGAATGTTGTAGTCGGACAGGGTTCGACC-GTCCTCAAGCTGCTTGCCAGCGAAGAT 30764 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 | ||||||||||| || || ||||| |||||||| ||| || ||||| | || Sbjct 30765 CAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTC 30824 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | |||||| | || ||| || || | ||||| ||| ||||| |||||||| || ||||| Sbjct 30825 GATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 30884 Query 133652 AATCTGCATGGCTTATT 133668 | ||| |||| |||| Sbjct 30885 A--CTGGATGGTGTATT 30899 >seq13 Length=187677 Score = 102 bits (112), Expect = 8e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||| |||||||| || Sbjct 67632 GGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCAAGCTGCTTTCC 67573 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || ||||| || |||||||| ||||| ||| Sbjct 67572 AGCGAAGATCAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGAATCTTCGACTT 67513 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| || || | | ||| || |||| |||| ||| |||||||| || || Sbjct 67512 GACATTGTCAATGGTATCAGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGT 67453 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| || |||||| Sbjct 67452 CTTGACGAAGATTTGCATG 67434 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| |||||||| ||| || || | | | |||||||| Sbjct 68169 AAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCA-TCCTCGAG 68111 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | ||||| ||||||||||| || || |||||||||||||| || Sbjct 68110 CTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAAT 68051 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | ||| || | | || || || | || | || ||||| Sbjct 68050 CTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACTTCCAATGTAATAGTCTTGCC 67991 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||| || ||||| |||||||| Sbjct 67990 AGTCAAAGTCTTGACGAAGATCTGCAT 67964 >seq521 Length=16305 Score = 91.5 bits (100), Expect = 1e-13 Identities = 333/515 (65%), Gaps = 15/515 (3%) Strand=Plus/Minus Query 120355 TACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATA 120414 || || || || || ||||| || |||||||| || || ||| |||||||| | ||| Sbjct 13947 TATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTACCACCCAAGGAAATGTTCTCCATG 13888 Query 120415 AACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGC--CCAACTGTA-CGAGCAGT 120471 || ||||| |||||| ||| | |||| | | | |||| | | | | || Sbjct 13887 AAATCGAAGGGGTTG---GCGGTTTTGTATACCTTTTCGTTACCAAGAGCAACCAATAGG 13831 Query 120472 CGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCG-CGTTCATGCCCAGCAACGC 120530 || || || ||||| ||||| || | ||| | || | |||||||||| || | || Sbjct 13830 CGATCGGCGACAAATTCAATATATTGCTTCATT-AGTGTGGCGTTCATGCCTAGGAGAGC 13772 Query 120531 CACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 ||||| ||| || | |||||| | ||| ||| | || || || ||| || | Sbjct 13771 ACACGGCAGAGCCTCGGTCAGAAACTCTTGCTCGATGCCAACAGCGTCGGTGATGATATC 13712 Query 120591 GAGCATAGTGTGGCCG--GGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCA 120648 | ||| | || | ||| || | |||||| || | |||| || ||| Sbjct 13711 CTGGATAATTTGCTTGCTGGCTCGGTGCTTAAGATGCGAGTGCA-----ACAGACATGCA 13657 Query 120649 AAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGC 120708 ||||| ||||||| ||||| || || || || || ||||| || || ||||||||| Sbjct 13656 AAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGGCCGGGC 13597 Query 120709 ATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCC 120768 || | || | |||||| |||| || | ||||||| || ||||| | |||| Sbjct 13596 ATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGATGCCC 13537 Query 120769 TCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCAC 120828 ||||| || || || |||| ||||| ||| || | | |||| | ||||| Sbjct 13536 TCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGGAATCCTTGTCCTGAATCCAA 13477 Query 120829 TTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 |||||||| || || ||||| || | ||| || Sbjct 13476 CGAATGGCCCAGTCTGCTTTTTTTCGGATGCAGGG 13442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483408146460560