Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 2e-15 >seq13 Length=187677 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||| | ||| | |||||| || || || |||||||| ||| Sbjct 68419 ACCACCACGCAGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCT 68360 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| |||| |||| || |||||||||||||| | || ||||| || | || Sbjct 68359 CAGTGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGG 68300 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || ||| || | || |||| ||| | ||| || ||||| | Sbjct 68299 GATTCCCTCCTTATCCTGAATCTT-GGATTTGACATTGTCGATGGTATCAGAAGATTCGA 68241 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || || || || ||||| || |||||| Sbjct 68240 CTTCCAAGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCATA 68191 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/216 (70%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| || || || || ||||| |||||||| || || | || |||| || Sbjct 67938 TGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGACCATCTTCCAGCTGC 67879 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || ||||| ||||||||||| | || | |||||| || || ||| ||| Sbjct 67878 TTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTC 67819 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | || |||| ||| | ||||||| || || || |||| ||||| || || || || Sbjct 67818 -GATTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCAGT 67760 Query 33726 TAACGTTTTTACAAAGATCTGCAT--AGTTGGTGTG 33759 || || || |||| | ||||| |||| ||||| Sbjct 67759 CAAAGTCTTGACAACTGT-TGCATAGAGTTAGTGTG 67725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328695611268480