Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq315 190 2e-43 seq104 95.1 1e-14 >seq315 Length=31375 Score = 190 bits (210), Expect = 2e-43 Identities = 986/1543 (64%), Gaps = 55/1543 (4%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || || || || |||| ||||| | | || | ||| ||| | ||| Sbjct 24485 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 24544 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 ||||| ||||||| || || | ||||| | || | ||||| |||||| || | | Sbjct 24545 TCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTCGAGGCGGTGGGCATGGGAGCGAGC 24604 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | ||| || || || | ||||| | | ||| | ||||||| | | | ||| ||||| Sbjct 24605 AGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCAT 24664 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCT--CGACTGGCGGGAC 147130 | | || ||| | || |||||||||||| | || || | ||| ||| ||||||| Sbjct 24665 AACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGA--GGCGGGAG 24722 Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAATTCACAGCTTGCCTCG-AG 147188 ||| ||| |||| |||| || | || || | ||| ||| || | || || Sbjct 24723 AGCCCTTGAAGGTAGAGTAGGGGCCTT-GCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAG 24780 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGG--ACGGTCGCTTCTTCGCTC 147246 || | | ||| ||||| ||| ||| || ||||| || |||| || || | Sbjct 24781 TGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGG--GCCTCGGGAGAC 24838 Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 ||| | ||||| |||||| | ||| || || || | |||||| | ||| || ||||| Sbjct 24839 TCGAAGGGCATGCGCAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGATG 24898 Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAA 147364 |||||||| ||||||| | || || || ||||| || |||||| ||||| Sbjct 24899 GGTCGATGTCGCATGTTGCTGT--TGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAA 24956 Query 147365 TAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCAT 147424 | ||||||||||||||||| || || |||| ||| | | ||| |||| || || | Sbjct 24957 TGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGAAAGTCGT 25016 Query 147425 AAGTCCCGTCTTCG----ACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAG 147480 | || |||| | ||| | ||| || || ||| | ||| |||| ||||| Sbjct 25017 AGCGGCCTTCTTTGTAGTCGACGAAGGCA--GG--CAGGGCAAGAGAGGCCAAGTTGCAA 25072 Query 147481 ACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTT 147540 || || ||| || | | | | ||||| | ||| || | |||||||||| || Sbjct 25073 ACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGA 25132 Query 147541 ATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTAC 147600 ||| ||||| || | ||| ||||| || | ||||| || || ||| | ||||| | Sbjct 25133 ATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAG 25192 Query 147601 GGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTCGCACC 147660 || ||| || ||| || | || | ||| | || | ||| || || | Sbjct 25193 GGGTTGCCCGTTTCGGTCTGGGACTCGAGGATCGAGTACCAGAGCTTCTGGGCACGAATA 25252 Query 147661 CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCG 147720 || || |||||||| || ||| ||||| | |||||| || ||||| Sbjct 25253 GTCTTGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCTCGCCA 25312 Query 147721 TAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCG 147780 |||||||| || ||||| || |||| | |||||||| || | ||| ||| | Sbjct 25313 TAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTT 25372 Query 147781 TTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCG----CGC 147836 | ||||| ||| || ||||| || | |||||| || | || ||||| || Sbjct 25373 TCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGG 25432 Query 147837 TTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTG 147896 ||| | |||| || | || || ||||| ||| | | | | ||| ||||| Sbjct 25433 TTTTC-TTCCTTACCGTGGTTCTTTCG---CAAATCAAGAAAGTCGAACACGTCTGCGTG 25488 Query 147897 CCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATG 147953 ||| || || | ||||| ||| | ||||| ||| || ||||||||||| || | Sbjct 25489 CCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTA 25548 Query 147954 GCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT 148013 | | ||||||| || ||||| | |||||| | |||| | | || |||||||| Sbjct 25549 TCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAATGATGCCGTTGGATGTACCGTTGGT 25608 Query 148014 GGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC-GC 148072 | || | |||| || || | ||| ||||| | ||| || || || || Sbjct 25609 GCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGC 25668 Query 148073 CGTACTTTGA---TATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGT 148129 | | ||| || |||||| | | | | |||| |||||| ||||| ||||||| Sbjct 25669 CAT-CTTGGAGATCATGGCACAGGTCTTG-AGAGTGTC--GTAGATACCGTCAATGCTGT 25724 Query 148130 CGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGA-AT--CCGCGTTCCCGCCG 148186 ||| || | | | | | ||||| ||| ||| || || || | || || || Sbjct 25725 CGTCCTTCATGTCGACTAGGAAACAGGAAGACA---GCTGACATTGGGGGGTACCAGCGT 25781 Query 148187 AGAAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTC 148244 ||| || || || ||||| || || | || | || ||| | | | || ||||| Sbjct 25782 TGAAGAGTGTAGGTGAGGCGTGGGTGAAAAGCTTGCTGGA--CATGAGGTGGTAGGTCTC 25839 Query 148245 AATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTG 148304 | | || || |||| ||| || ||| || | ||| |||||||| | ||||||||| Sbjct 25840 CAAAACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTG 25899 Query 148305 TGGTCGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGT 148363 || || ||| ||| |||| ||||| |||||||||||| | || || || ||| Sbjct 25900 GGGCCGCTCGACAATCTTG-CCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGA 25958 Query 148364 AACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 | |||||||| | || | || ||| ||||| | ||||| Sbjct 25959 AGCCAAAGTATTGATAGTTGAAGTCTCTGTCGTAGACAATGGC 26001 >seq104 Length=76965 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| ||||| || | | | ||| || || |||||||||||||||| ||| Sbjct 66896 ACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGT 66837 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| |||||||| ||||| | | |||| || || || || || || || ||||| Sbjct 66836 ACGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCC 66777 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || |||| | |||||| || | Sbjct 66776 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAG 66717 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || ||||| | |||||||||||| Sbjct 66716 GGTGATTGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 66675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476598724701840