Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq315 104 3e-16 seq521 91.5 2e-12 >seq315 Length=31375 Score = 104 bits (114), Expect = 3e-16 Identities = 207/304 (68%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 259883 ACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGC 259941 |||||| | |||||| ||||| | | |||||| || | || || ||||| || || Sbjct 25836 ACCTACCACCTCATGTC-CAGCAAGCTTTTCACCCACGCCTCACCTACACTCTTCAACGC 25778 Query 259942 CGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGAT 260001 || || || | ||| || || || || || | |||||||||| ||| || Sbjct 25777 TGGTACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTCGACATGAAGGACGACAGCAT 25718 Query 260002 CGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCAT 260061 || || ||||| ||||| |||||| || || | ||||||||| ||| || || || Sbjct 25717 TGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGAAT 25658 Query 260062 CGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCA 260121 ||| || || ||| | || || | ||| | ||| | || ||||||||||| Sbjct 25657 CGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCAACGGTAC 25598 Query 260122 GTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 ||||||||| | | |||||||| ||||| || ||| |||| || | ||||| ||||| Sbjct 25597 ATCCAACGGCATCATTCCCATGCTCCGCGTCTTCAACAACACTGCCAGATACGTTGACCA 25538 Query 260182 GTGC 260185 | || Sbjct 25537 GGGC 25534 >seq521 Length=16305 Score = 91.5 bits (100), Expect = 2e-12 Identities = 201/295 (68%), Gaps = 5/295 (2%) Strand=Plus/Plus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACG-ATGCTCGTCAACAAGCCGTCGAC 1456506 ||||||||| |||||||| |||||| | || || || | || | |||| | | Sbjct 13640 GGTTTGCACACAGACTTTGCATGTCTGTTGCACTCGCATCTTAAGCACCGAGCCAGCAAG 13699 Query 1456507 CGACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGA 1456566 | | | ||| | | |||||| ||| || || | |||||| |||||||| | | ||| Sbjct 13700 CAAATTATCCAGG-ATATCATCACCGACGCTGTTGGCATCGAGCAAGAGTTTCTGACCGA 13758 Query 1456567 GTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAAT 1456626 | | |||||| || ||| | ||||||||||||| | || ||| || || |||||| Sbjct 13759 GGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCA-CACTAATGAAGCAATATATTGAA- 13816 Query 1456627 TTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAA 1456686 ||||||||||| ||||| | | || || || | || ||| ||| || ||||| Sbjct 13817 TTTGTCGCCGATCGCCTATTGGTTGCTCTTGG-TAACGAAAAGGTATACAAAACCGCCAA 13875 Query 1456687 CCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||| ||| | |||||| || || | | || ||||| ||||| |||||| Sbjct 13876 CCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGTAAGACAAACTTCTTCGAG 13930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177609229851228