Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq315 203 4e-47 >seq315 Length=31375 Score = 203 bits (224), Expect = 4e-47 Identities = 964/1521 (63%), Gaps = 38/1521 (2%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||| |||| || || | || |||||| || || ||||| || | | Sbjct 24494 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 24553 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||| || ||||||||||| | || || || || ||||| || || | || || Sbjct 24554 TCATTGTTACCCAGAATTTGCGAGGTCGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAG 24613 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 || | || ||| || |||| | || || |||| | ||| ||||| | ||||| Sbjct 24614 TTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCATAACTCAGAA 24673 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATAT 68958 || |||||||| | ||| |||| ||||| || | || || || || | Sbjct 24674 GGCTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAG 24733 Query 68959 GTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAA 69018 || || || |||| || || || || ||| | || | |||| ||| || Sbjct 24734 GTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTCAGTGCAGCGTGGTAG 24793 Query 69019 ATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGT 69078 || || ||||| |||| ||| ||||| || | || || || ||||| || | Sbjct 24794 ATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGC 24853 Query 69079 AAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTA 69138 | | || ||| || || || | |||||||| |||| |||||| |||| ||||| | | Sbjct 24854 AGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATG 24913 Query 69139 TTTGAACTTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 || | || | ||| || ||| || |||| || | ||| || || || || || || Sbjct 24914 TT-GCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTT 24972 Query 69198 TCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATA-- 69255 ||||| || |||| | || || | || || |||| || | || || ||| | Sbjct 24973 ACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGAAAGTCGTAGCGGCCTTCTTTGTA 25032 Query 69256 ----ACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATT 69311 || || | ||| || | ||| || | || ||||| || ||||||| || Sbjct 25033 GTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGG-- 25090 Query 69312 TGCA---TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTG 69368 ||| || | || ||||| || || || || | || || ||||| || | Sbjct 25091 -GCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTT 25149 Query 69369 CTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAAT 69428 ||| || |||||| |||| ||||| |||||||| || ||||| || | || ||||| | Sbjct 25150 CTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGT 25209 Query 69429 CTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTA---ACG 69485 ||| || |||| || || | ||| | | ||| || |||||| ||| Sbjct 25210 CTGGGACTCGAGGATCGAGTACCAGAGCTTCTGGGCACGAATA---GTCTTGCGGCCACG 25266 Query 69486 CTTCTCTTTTTCATATTGT--GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCC 69543 ||| ||||| | | ||| | |||| || ||||| || || | |||| || Sbjct 25267 GCCCTCACGCTCATACTTTTCGTAGAGAGCC--TCAAATTCCTCGCCATAGCAATCAGCC 25324 Query 69544 AATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTA---ACTCGT 69600 | ||||| || || || |||||||| | | ||| ||| | | ||| || || Sbjct 25325 AGGCCAGGGCACTCGTTGGGACACATGAGGGTCCA---ATCCCCGTTCTTTTCGACGCGC 25381 Query 69601 TTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCA 69660 ||||| || ||||| || ||||| ||||| | ||||| || | | | |||||||| Sbjct 25382 TTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCC 25441 Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || || || ||| | ||| ||||| || | | || | ||||| || || || Sbjct 25442 TTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGG 25501 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 || || || | | || ||||| || || || ||||| || | ||||||||||||||| Sbjct 25502 TAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTG 25561 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 || |||| | ||||| ||||| || || || ||| |||| || || || | ||| ||| Sbjct 25562 TTGAAGACGCGGAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAA 25621 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 || | || || || | | || ||||| || ||||| || ||||| Sbjct 25622 GAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATC 25681 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGA 69960 | ||||| || | ||||| || ||||| || ||||| || || |||||| | Sbjct 25682 ATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACT 25741 Query 69961 AGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCG 70020 || |||||| ||||| ||| || || || || || || | |||||| || ||| Sbjct 25742 AGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCG 25801 Query 70021 TGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATA----GCTGATTCTATATC 70076 || ||||| || || | || | ||| || || | | ||| | | | | || Sbjct 25802 TGGGTGAAAAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATGT-TGTC 25860 Query 70077 CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTT 70136 | | ||| || | ||| || ||||| | ||| ||||| || || || || | || Sbjct 25861 TCCC---CAAATACCGACCGCAACGCGCATAATCATGTGCTGGGGCCGCTCGACAATCTT 25917 Query 70137 ATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGA 70196 || | ||| | || |||||| | |||||||| || || ||||| || | || Sbjct 25918 GCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTT 25977 Query 70197 AAAGTCTCTTTCGTAAATAAT 70217 |||||||| ||||| | ||| Sbjct 25978 GAAGTCTCTGTCGTAGACAAT 25998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686890820162160