Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq521 96.9 3e-15 >seq521 Length=16305 Score = 96.9 bits (106), Expect = 3e-15 Identities = 203/295 (69%), Gaps = 7/295 (2%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || |||||||||||||| || || | || || || ||||| || || || | ||| || Sbjct 13049 ATCTGGCAAATGTACAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAGGAGATCGATCTG 13108 Query 43790 ACTAAAGACTTAGCAC-ATTGGATTG--CATTAAAACCACAA-GAAAAACATTTTATATC 43845 | || ||||| |||| |||||| | | | | || | || ||| | || || || Sbjct 13109 TCCAAGGACTT-GCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTCATCTC 13167 Query 43846 TTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCG 43905 ||||||| || |||||||| ||||| || ||||||||||| || || || Sbjct 13168 ACACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACCTGCTTGAGCG 13227 Query 43906 GTTT-GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCA 43964 || ||| || ||||| | || || || || || || ||||| ||||| || | Sbjct 13228 TTTCAGCGGC-GAGGTTCAGGTTCCGGAGGCTCGTTGCTTCTATGGATTTCAGATCATGA 13286 Query 43965 TAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 | || |||||||| || |||| ||| ||| ||||| |||| ||||||||||| Sbjct 13287 TGGAGAATATTCACTCTGAAACATACTCTCTCCTGATTGATAGCTACATCAAAGA 13341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397445856674470