Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq315 91.5 1e-13 seq13 87.8 2e-12 >seq315 Length=31375 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 130763 TGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGAT 130822 || || |||||||||| ||| || | |||||||||| |||| | || |||||| | Sbjct 24494 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 24553 Query 130823 TCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAA 130882 || ||||| || | ||||| | || | |||||||||||| || | | | || Sbjct 24554 TCATTGTTACCCAGAATTTGCGAGGTCGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAG 24613 Query 130883 TTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTA 130942 || |||| ||||||| | |||| | ||||| | ||||| ||||||| | | Sbjct 24614 TTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCATAACTCAGAA 24673 Query 130943 GGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGA 130993 || |||||| |||||||| || ||||| || || |||| ||||||| Sbjct 24674 GGCTTGACA---TTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGA 24721 >seq13 Length=187677 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||| |||||||| | ||||| || || ||||||||||||||| | Sbjct 68190 CCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 68131 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || |||||||| ||||| || | ||||| ||||| || || || || Sbjct 68130 AAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 68071 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||| || | | || | || || | | ||| ||| Sbjct 68070 ATGCCTTCCTTGTCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACT 68011 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || |||| ||||| |||| ||| || || ||||| |||||| Sbjct 68010 TCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATA 67963 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || || || ||||||||||||| |||| ||||||| ||||| || ||||| || Sbjct 68382 TCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAA 68323 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || || || || || || || || | ||||| ||||| |||||| ||| | | Sbjct 68322 ATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGATTTGACATTG 68263 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | || || | | ||| ||||| | || |||| || || |||| || || ||| Sbjct 68262 TCGATGGTATCAGAAGATTCGACTTCCAAGGTGATAGTCTTTCCAGTCAAGGTCTTGACA 68203 Query 27237 AAGATTTGCATA 27248 || ||||||||| Sbjct 68202 AAAATTTGCATA 68191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424923555408528