Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq315 291 1e-73 >seq315 Length=31375 Score = 291 bits (322), Expect = 1e-73 Identities = 1170/1808 (65%), Gaps = 51/1808 (3%) Strand=Plus/Plus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTT 110427 |||||||| || |||||||| || ||||| || || | |||||||| | || ||| Sbjct 24185 TAGTACATGCCCGTCTTGAGACCCAACTTCCA-GCCAGCAAAGTGCATAGAGGTGATCTT 24243 Query 110428 GGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGC 110485 | ||| || ||| | |||| | ||| | ||| |||| |||| || ||| Sbjct 24244 GCCCATAGTAGGATCCTTCATGTGAACGTTGAGCGACTGGGACT--GGTCGATAAAGGCA 24301 Query 110486 CCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAG 110545 || || | || ||||| | || |||| | ||| |||||||| || |||| Sbjct 24302 CCGCGATCGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTATAG 24361 Query 110546 AGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACC 110605 ||| |||||| || | ||||||| | ||| ||||| |||||||| | | | Sbjct 24362 AGAGCCTTGATGTCGGCGGGGATATTGGGGATGTTCTGAATGGAACCATTCTCGGCAATG 24421 Query 110606 ATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGC 110665 ||| | | |||||| | | ||||||||||| || | ||| || |||| ||| Sbjct 24422 ATGCGGTTCTTCATGGCATCAGACCAGAGACCCATGTCGACGAGATCCTTGAGGAGCCAG 24481 Query 110666 TTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTAT 110725 |||||| | || ||||| || | | | | | |||| ||||| | |||||| Sbjct 24482 GGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTAT 24541 Query 110726 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 110785 || |||||||| ||||| ||||||| ||||| | ||| ||||| || ||||| || || Sbjct 24542 GGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTCGAGGCGGTGGGCATGGGAGCG 24601 Query 110786 ATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGT 110843 | || || || ||| |||| ||| | ||||||||| | ||||| ||| ||||| | Sbjct 24602 AGCAGCAACGA--GTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACT 24659 Query 110844 CG--TAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGC 110901 | || | || || || || |||| ||||||| || ||||| | |||| || || Sbjct 24660 CCCATAACTCAGAA-GGCTTGACATTCC-ACATGTCGAATTGAAGAATACCTTCCGAGGC 24717 Query 110902 GGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTC 110961 |||||| |||| ||||| |||| ||||| ||| |||| ||| || | || Sbjct 24718 GGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTG 24776 Query 110962 -CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTG 111020 ||| | ||||| || ||||| || ||||| | || | ||| ||| || | Sbjct 24777 TCAGTGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAG 24836 Query 111021 AATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 | || || | ||| || | || ||| | || || ||||| |||||||| | ||| Sbjct 24837 ACTCGAAGGGCATGCG-CAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCG 24895 Query 111080 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCA 111139 || |||| |||||||| || || || || ||||| ||| ||| || ||| Sbjct 24896 ATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCA 24955 Query 111140 ATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA 111199 |||| ||| || || | || | | |||| || || || || | | | || Sbjct 24956 ATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGAAAGTCG 25015 Query 111200 AAAGTGCGAGTCTCTTCATT-GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 111258 | || ||| | | | ||| | || ||||| | || ||||| |||||||| Sbjct 25016 TAGCGGCCT-TCTTTGTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAAC 25074 Query 111259 AGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAAT 111318 ||| |||||| | |||||| | || || || || | |||||| || ||| Sbjct 25075 AGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAAT 25134 Query 111319 CGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGG 111378 || |||| ||||| ||||| ||||| ||||||| ||||||||||| ||||| |||| Sbjct 25135 GGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGG 25194 Query 111379 CGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAA 111437 | ||||| || ||||| || | ||| || | | ||| | | || | ||| | || Sbjct 25195 GTTGCCCGTTTCGGTCTGGGACTCGAGGATCGAGTACCAGAGCTTCTG-GGCACG---AA 25250 Query 111438 TGGCGTT--GGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 111494 | | || |||| || ||||| ||| |||||| |||||| || ||||| ||||| Sbjct 25251 TAGTCTTGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCTC-G 25309 Query 111495 CCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCT 111553 ||| || || | || || || || || ||||| | || | ||| | || | | Sbjct 25310 CCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAAT--CCCCGT 25367 Query 111554 TC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTAC 111611 || || || ||||||||||| || ||||| |||||||| | ||||| || | | Sbjct 25368 TCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAG 25427 Query 111612 ACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGT 111671 || ||||| | ||| ||||| ||| || ||||| || || | | || |||| Sbjct 25428 CACGGTTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGT 25487 Query 111672 GCCATGGCTCAAGATAG------ACTGCGATAGATCCCTT-TCGACGCCCAGCTTGATTT 111724 |||| ||||| || ||| | ||| || || ||| | ||||| || | Sbjct 25488 GCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCC----TGGTCA 25543 Query 111725 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 111784 || || | || ||| ||| || ||||| ||||| ||||| || || | ||| ||| Sbjct 25544 ACGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAATGATGCCGTTGGATGTACCG 25603 Query 111785 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 111844 || || || ||| ||| | || | | |||| || || || || || Sbjct 25604 TTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCA 25663 Query 111845 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 111904 |||||| ||| ||||| ||||| | | ||||| | |||||||||| || | Sbjct 25664 CCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTG 25723 Query 111905 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 111964 || ||||| || ||| ||||| || |||| ||| | || |||||||| ||| Sbjct 25724 TCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTG 25783 Query 111965 AAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCA 112022 ||||| || |||| ||||| ||| | | |||| |||||| || ||| ||||||| Sbjct 25784 AAGAGTGTAGGTGAGGCGTGGGTGA--AAAGCTTGCTGGACATGAGGTGGTAGGTCTCCA 25841 Query 112023 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTG 112082 | || ||||||| || || || |||| || || ||||| | ||||| ||| | Sbjct 25842 AAACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGGG 25901 Query 112083 GGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGA 112141 | || | | |||| | ||| ||||||| | || |||| || || |||| Sbjct 25902 GCCGCTCGACAATCTTGCCGTTGAGTTTGAGAAGATATGATC-TCTCCAGAGTCTTGAAG 25960 Query 112142 CCAAAGTA 112149 |||||||| Sbjct 25961 CCAAAGTA 25968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628015561262400