Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq315 311 1e-79 seq521 100 4e-16 seq311 98.7 1e-15 >seq315 Length=31375 Score = 311 bits (344), Expect = 1e-79 Identities = 1138/1767 (64%), Gaps = 25/1767 (1%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||| |||||| || |||| | || | ||||||||| ||||||||||| | Sbjct 24147 TGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGAC 24206 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 || ||||||| || | ||||| |||| | |||| | || ||| | |||| Sbjct 24207 CCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGT 24266 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 | ||| | ||||| || ||||| ||| || ||||| || ||||| | || | Sbjct 24267 GAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCGGCCATCTGGATAA 24326 Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044 ||| | || ||||| |||||| | ||||| ||| || || | ||||||| Sbjct 24327 CATGACGCTGAGAAATCTCCCAAACAGTCTTATAGAGAGCCTTGATGTCGGCGGGGATAT 24386 Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACC 118104 ||| || || ||||| ||| | | | ||| | | |||||| | | |||| Sbjct 24387 TGGGGATGTTCTGAATGGAACCATTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACC 24446 Query 118105 AGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCG 118164 ||||||| || | |||||||| | ||| ||||| || || ||||| | Sbjct 24447 AGAGACCCATGTCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAG 24506 Query 118165 CGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCA 118224 | | | || | | | || || |||| |||||||||||||||||||||||||||||||| Sbjct 24507 CCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCA 24566 Query 118225 AGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT 118284 ||||| | || ||||| ||||||||||| || | || | ||| || | ||| | Sbjct 24567 GAATTTGCGAGGTCGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGT 24626 Query 118285 TTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCG--TAGTTGAGCTTTGTCTCCCCCTG 118342 ||| | || | ||||| ||| |||||| || || | || | || | | Sbjct 24627 GCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCATAACTCAGAA--GGCTTGACATT 24684 Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||| || || || || ||||||| || || || || |||| || || || || Sbjct 24685 CCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGAGTAGGG 24744 Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG-AGGGCTGCGTGATACATTGTTTCAA 118461 ||| | | | |||| || || | || || || ||||| || || || || | Sbjct 24745 GCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAGTGCAGCGTGGTAGATGGTCTCGA 24803 Query 118462 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-AATA 118520 | || | || | | ||||||| || || || | | || || | || | Sbjct 24804 AGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCG-CAGAGCAAGA 24862 Query 118521 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTC 118580 || | || || ||||| || ||||| | || || || ||||||| ||| || || Sbjct 24863 AAAGCGTCAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTGTTG 24922 Query 118581 CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACA 118640 ||||| ||| | ||| ||| || ||| || | | | || || || | ||| Sbjct 24923 CGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTTACGGACGACC 24982 Query 118641 ACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT-GACATA 118699 || | |||| || || ||||| | | || | | || ||| | | | ||| | Sbjct 24983 ACTTGAGTGACCTCGTGGAGCTTCTGAAAGTCGTAGCGGCCT-TCTTTGTAGTCGACGAA 25041 Query 118700 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 118759 ||| ||||| | || |||| || || |||| |||||| || |||||| Sbjct 25042 GGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTC 25101 Query 118760 TATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 118819 || || |||||||||| ||| || || |||||| |||| |||||| || || ||| Sbjct 25102 AATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTT 25161 Query 118820 TGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 118879 | |||| || ||||||||||| ||||| | || | ||||| || || ||||||| ||| Sbjct 25162 TCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAG 25221 Query 118880 AATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGT 118938 || | | ||||| | || | || | | ||| | | | || ||||| ||| | Sbjct 25222 GATCGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTCAT 25280 Query 118939 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 118998 ||||| |||||| || ||||| || || || | || | || || || || | Sbjct 25281 ACTTTTCGTAGAGAGCCTCAAATTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGT 25340 Query 118999 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGA 119058 || || | ||| | ||| | || || || || |||||||||||||| ||||||| Sbjct 25341 TGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGA 25400 Query 119059 TCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 119118 |||| || || |||||| || ||| || |||||| | || || || |||| Sbjct 25401 TCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTACCGTGGTTCTTTCGCA 25460 Query 119119 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 119178 | || | |||||| | | || |||||||| || || ||||| | || | || || Sbjct 25461 AATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACC-- 25518 Query 119179 TACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCA 119232 | | || ||| |||||| || || || |||||| ||| || || || |||| Sbjct 25519 -AGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGGAGCA 25577 Query 119233 TTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA 119292 | |||||||| || | |||| || || || || ||| ||| | || | || Sbjct 25578 TGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGA 25637 Query 119293 CATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGA 119352 ||||| || || || || || || ||| ||| ||||| || || | ||| Sbjct 25638 TGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGA 25697 Query 119353 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACA 119412 || || ||||||| || || || ||| |||| | ||| ||||| ||| |||| Sbjct 25698 GAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACA 25757 Query 119413 TTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTT 119472 ||| ||| ||||||||||||||||| || |||| |||||| ||| | | ||| Sbjct 25758 GCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA--AAAGCTT 25815 Query 119473 G--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGAT 119530 | |||||| || |||||||||||| ||| ||||| || || |||||||| Sbjct 25816 GCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATGTTGTCTCCCCAAATACCGAC 25875 Query 119531 CGAGACCCGCATAAACATGTATTGGGG 119557 || || ||||||| ||||| ||||| Sbjct 25876 CGCAACGCGCATAATCATGTGCTGGGG 25902 >seq521 Length=16305 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | |||||| ||||||||||| ||||| || |||||| || || Sbjct 13659 GCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGGCCG 13600 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| ||||| |||||||| | ||||||||||| ||| | || ||||||||| Sbjct 13599 GGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGATG 13540 Query 130136 CCCTCCACACACGCGAACGC 130155 ||||||||| ||||| || Sbjct 13539 CCCTCCACAGCAGCGAAAGC 13520 >seq311 Length=31549 Score = 98.7 bits (108), Expect = 1e-15 Identities = 225/333 (68%), Gaps = 12/333 (4%) Strand=Plus/Minus Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG----TTGATTTTCACGGGCAA 14291 ||| | ||| || | ||| |||||||||| ||| | || ||| ||| |||| Sbjct 7456 ACCAATGGCATCCAGTTCGTCGATGAAAATGATGGAAGGCGACTTGGCTTT----GGCAG 7401 Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351 | ||||| ||||| |||| ||||||||| ||||| ||||| || || | || || Sbjct 7400 CACTAAAGAGCTCTCGGACTCGCTTGGCACCTACACCGACAAAGATTTCGTCGAA-TTCA 7342 Query 14352 CGGCGGAACAT-TGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGG 14410 | | | |||| | || |||||| ||| || |||||| || | |||||| || || || Sbjct 7341 CTACCGGACATGTAGAAGAAGGGCACGCCAGCTTCACCGGCCACGGCTCGCGCAAGTAGA 7282 Query 14411 GTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCACCACT 14469 ||||||||||| ||||| ||| | ||||| |||| | |||| | | ||||||| Sbjct 7281 GTCTTCCCCGTTCCTGGAGGCCCAACCAGAAGAACACC-CTTGGGCAACTTGGCACCCAA 7223 Query 14470 GCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGC 14529 | | | || ||| || | || || || || || | ||||| | || ||||| || Sbjct 7222 GTCGGAAAAGTTTTCGGGGTTCTTGAGAAACTCAACCACTTCTTGTAGCTCTTCCTTGGC 7163 Query 14530 GGCGTCGATGCCTTCAACGTCACTGAAGCGTGT 14562 | || ||| | ||||| ||||| || || Sbjct 7162 CTCATCACAGCCATGCACGTCGCTGAATCGGGT 7130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618419012458640