Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq315 264 1e-65 seq521 102 1e-16 >seq315 Length=31375 Score = 264 bits (292), Expect = 1e-65 Identities = 1114/1738 (64%), Gaps = 41/1738 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | |||||||| || |||||||| || || ||||||| || Sbjct 25902 CCCCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGAGCGCGTT 25843 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 |||||||| ||| || |||||| |||| | | ||| ||||| |||| || |||| Sbjct 25842 TTGGAGACCTACCACCTCATGTCCAGCAAGCTTT--TCACCCACGCCTCACCTACACTCT 25785 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| |||||||| || | || |||| || ||||| ||| || ||||| | Sbjct 25784 TCAACGCTGGTACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTCGACATGAAGGACG 25725 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || |||||||||| | ||||| | | ||||| ||||| ||| ||||| Sbjct 25724 ACAGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTG 25665 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | || || || || || |||| | | || | ||| ||| || || | Sbjct 25664 GTGGAATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCA 25605 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| ||| | || || ||||| ||||| ||||| || ||| ||| || | || | Sbjct 25604 ACGGTACATCCAACGGCATCATTCCCATGCTCCGCGTCTTCAACAACACTGCCAGATACG 25545 Query 104580 TAAATCAAGCTGGGCGTCGA-AAGGGATCTATCGCAGT------CTATCTTGAGCCATGG 104632 | | || ||||| | ||| || || ||| | ||| || ||||| ||| Sbjct 25544 TTGACCA----GGGCGGTAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTTGG 25489 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 ||||| || | | || || ||||| ||||| ||||| ||| | || || || Sbjct 25488 CACGCAGACGTGTTCGACTTTCTTGATTTGCGAAAGAACCACGGTAAGGAAGAAAACCG- 25430 Query 104693 TGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 ||| ||||| |||||| ||||| ||||| |||||||||||||||||| | || || | Sbjct 25429 TGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAAA 25370 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 || || ||||| | ||| | ||||| || || ||||| || | ||| | || Sbjct 25369 GAACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTATGG 25310 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG-GGCGACTGCGACGG 104870 ||||| ||||| || || ||| |||||| ||| || || || ||| | ||| Sbjct 25309 CGAGGAATTTGAGGCTCTCTACGAAAAGTATGAGCGTGAGGGCCGTGGCCGC-AAGACTA 25251 Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | | || | || | | ||| | | || ||| |||| || ||||| || || | || Sbjct 25250 TTCGTGC-CCAGAAGCTCTGGTACTCGATCCTCGAGTCCCAGACCGAAACGGGCAACCCC 25192 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 | ||||| ||||| || ||||| ||| |||||| || || ||||| |||| || Sbjct 25191 TTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGGGAACCATT 25132 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 || ||||| || || || || ||| | || | | | |||||| ||||| Sbjct 25131 CGCAGCTCCAACCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGGTTGCTGTT 25072 Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC-ATTTGA 105108 || ||| | || || | || || || | || || | | | | || | | | || Sbjct 25071 TGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGTCGA-CTACAAAGAAGGCCGCTACGA 25013 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 | | | || |||||||| || || || ||| | ||||| |||| | ||||| Sbjct 25012 CTTTCAGAAGCTCCACGAGGTCACTCAAGTGGTCGTCCGTAACCTCAACAAGATCATTGA 24953 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 | || ||||||| ||||| ||||| || || ||| |||| || || || || Sbjct 24952 TGTCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGACCCATCGG 24893 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATG-TATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287 | | |||||||||||||| || || | | ||| | || || ||| | || || || Sbjct 24892 TGTTGGTGTTCAGGGTCTTGCTGACGCTTTTCTTGCTCTG-CGCATGCCCTTCGAGTCTC 24834 Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347 ||| || || |||| || || || |||||||| || ||||| || || | Sbjct 24833 CCGAGGCCCGTGAGCTCAACAAGCAGATCTTCGAGACCATCTACCACGCTGCACTGACAG 24774 Query 105348 CGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 105407 | | ||| |||| | | | || || || ||||| |||| ||||| || | Sbjct 24773 CCTCTCTTGAGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGCTCTCCCGCCT 24714 Query 105408 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC-----ACTACG 105461 | |||| | |||||||| || |||| |||| || |||| |||| | | Sbjct 24713 CGGAAGGTATTCTTCAATTCGACATGT-GGAATGT-----CAAGCCTTCTGAGTTATGGG 24660 Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 | ||||| ||| ||||| | ||||||||| | ||| |||| ||| | || | | Sbjct 24659 AGTGGGACAATCTGAAGGAGCAGATCAAGGAGCACGGTATTCGCAACTCGTTGCTGCTCG 24600 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 |||| ||||| || ||||| ||| | ||||| ||||||| ||||| |||||||| || | Sbjct 24599 CTCCCATGCCCACCGCCTCGACCTCGCAAATTCTGGGTAACAATGAGTGCTTTGAGCCAT 24540 Query 105582 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641 ||||| | ||||| || | | | | | | || || || || | | |||||| Sbjct 24539 ACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAATTCCAGGTCGTCAACCCCT 24480 Query 105642 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 105701 ||| | | || ||| || || ||||||||||| | | |||||| | | ||| Sbjct 24479 GGCTCCTCAAGGATCTCGTCGACATGGGTCTCTGGTCTGATGCCATGAAGAACCGCATCA 24420 Query 105702 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGT 105761 | | | |||||||||||| || || |||| || || || ||| | | Sbjct 24419 TTGCCGAGAATGGTTCCATTCAGAACATCCCCAATATCCCCGCCGACATCAAGGCTCTCT 24360 Query 105762 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821 | || |||||||| || | |||| || | |||||||| ||||| ||| Sbjct 24359 ATAAGACTGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCGCCGATCGCGGTG 24300 Query 105822 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAA 105879 ||| || || | |||| ||| | || | |||| | ||| || ||| ||| Sbjct 24299 CCTTTATCGACC--AGTCCCAGTCGCTCAACGTTCACATGAAGGATCCTACTATGGGCAA 24242 Query 105880 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 105937 | || | ||||||||| | | |||||| ||||||||| ||||| ||||| ||| Sbjct 24241 GATCACCTCTATGCACTTTGCTGGCTGGAAGTTGGGTCTCAAGACGGGCATGTACTAC 24184 >seq521 Length=16305 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 94886 ||| ||||| ||||||||| ||| |||| | | |||| |||||||||||||| || Sbjct 13531 TGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATTTTCTGGCTCAAGAAGCGTGG 13590 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCA 94946 ||| ||||| || ||| |||||| ||||| |||||||| ||||| ||||| | ||| Sbjct 13591 TCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCTCCCGTGATGAGGGTTTGCACAC 13650 Query 94947 AGAGTTTGC 94955 ||| ||||| Sbjct 13651 AGACTTTGC 13659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583245533148560