Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq13 176 1e-38 seq65 143 8e-29 seq104 107 6e-18 seq29 95.1 4e-14 >seq13 Length=187677 Score = 176 bits (194), Expect = 1e-38 Identities = 180/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || | ||| ||||||||||| || |||||||| | Sbjct 68198 TTTGCATACCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGT 68139 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || ||||| ||||| || || || || ||||||||||| || || ||||| | Sbjct 68138 AGTCGGACAAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGT 68079 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| ||||| || || ||||| |||| ||||||||||| |||| ||| || | Sbjct 68078 CAGGGGGAATGCCTTCCTTGTCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAG 68019 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| | ||||| ||||| || || | || || || || |||||||| Sbjct 68018 ATTCGACTTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 67964 Score = 141 bits (156), Expect = 3e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || |||||||| || || || || ||||| || || Sbjct 67966 CATACCACCACGGAGGCGGAGTACGAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTC 67907 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| || || || ||||| ||||| | || ||||||||||| Sbjct 67906 GGAGAGGGTACGACCATCTTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGG 67847 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| ||||||||||| || | ||| ||||| || || | || || | || Sbjct 67846 AGGAATACCTTCCTTATCCTGAATCTTCGATTTGACATTGTCGATGGTGTCGGAGGACTC 67787 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727 || ||||| || | |||||||| || | || || |||| Sbjct 67786 GACCTCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACAA 67746 Score = 127 bits (140), Expect = 6e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || ||||| | ||| || || || || || || || Sbjct 68419 ACCACCACGCAGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCT 68360 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | ||| || || ||||| || || ||||| ||||| || || |||||||| || ||||| Sbjct 68359 CAGTGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGG 68300 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||| || ||||||||||| || | ||| ||||| || || | |||||| | ||| || Sbjct 68299 GATTCCCTCCTTATCCTGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCGAC 68240 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| | || | |||||||| || | || || |||||||| ||||| Sbjct 68239 TTCCAAGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 68192 >seq65 Length=104434 Score = 143 bits (158), Expect = 8e-29 Identities = 454/703 (65%), Gaps = 3/703 (0%) Strand=Plus/Plus Query 349965 TGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAA 350024 ||||||| || | ||||| || |||||||| ||||| | | || ||| | | || | Sbjct 74827 TGCGTCGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCATCCTCTCTTCTGCAGCTCAGA 74886 Query 350025 CCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTG 350084 | | ||||| ||||||||||| || || | ||||||| | ||||||| || | Sbjct 74887 CTACGATTGAGATTGATTCTCTATTCGAGGGTATCGATTTCTACACCCCTATTACCCGGG 74946 Query 350085 CTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAG 350144 | || || ||||| | || ||||||||| | | || || | ||||| || | Sbjct 74947 CCCGTTTCGAAGAGCTTTGCCAGGATCTTTTCCGCTCCACCATCCAGCCTGTCGACCGTG 75006 Query 350145 TATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTT 350204 | | | || || || || |||| ||| || |||| | || || |||||||||| Sbjct 75007 TTCTCACTGACGCCAAGATTGACAAATCTCAAGTTCATGAGATTGTCTTGGTTGGTGGTT 75066 Query 350205 CTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTT 350264 | || || ||||| | | || | | | || || | || || |||||||| || Sbjct 75067 CCACCCGAATTCCCCGAATCCAGAAACTCATCTCCGACTACTTCAACGGCAAAGAGCCCA 75126 Query 350265 CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTT 350324 | || || || || ||||||||||||||||| ||||| ||||| ||||| |||| Sbjct 75127 ACAAGTCTATCAACCCTGATGAAGCTGTTGCATACGGTGCCGCTGTCCAGGCTGCTATCC 75186 Query 350325 TATCTGGAAATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCCAC 350381 | ||||| | | ||| || | | | || | || | || || || | || Sbjct 75187 TGTCTGGTGACACTTCTTCCAAGTCTACTAACGAAATCTTGTTGCTTGACGTCGCGCCTT 75246 Query 350382 TTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTA 350441 | || || || | || || | |||| | | ||||| || ||||| | || | | Sbjct 75247 TGTCTCTGGGTATTGAGACCGCCGGTGGAATGATGACGAAGCTCATTCCCCGTAACACAA 75306 Query 350442 CTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAA 350501 | | || || || ||||| | ||| || || ||| | || || ||||| | ||| Sbjct 75307 CCATTCCAACCAAGAAGTCTGAGGTTTTCTCGACCTTTTCTGACAACCAGCCTGGGGTGC 75366 Query 350502 CAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAAT 350561 ||||| || ||||| || || || ||||| || || || || | | || | | Sbjct 75367 TCATTCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTAATGGGCAAGT 75426 Query 350562 TTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCG 350621 || || | || ||||| || || | || ||||||||||||||||| | || | Sbjct 75427 TTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGCGTTCCTCAGATTGAAGTTACCTTTG 75486 Query 350622 ATATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAA 350664 || | ||| | |||||||| | ||||| | || |||||||| Sbjct 75487 ATCTCGATGCCAATGGTATCATGAATGTGTCTGCTGTTGAAAA 75529 >seq104 Length=76965 Score = 107 bits (118), Expect = 6e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633 || || ||||| || || || || ||||||||||| || |||||||| || || ||||| Sbjct 66838 GTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATG 66779 Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 || || || ||||| || || | || ||||| || || | || || | || || ||| Sbjct 66778 CCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCA 66719 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | |||||| || || || ||||| || ||||||||||| Sbjct 66718 AGGGTGATTGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 66675 >seq29 Length=152620 Score = 95.1 bits (104), Expect = 4e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 377494 ACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGC 377553 ||||| ||||| ||||| || || ||||| | ||| || | |||||||||||| |||||| Sbjct 4962 ACACCGGCAAAATGGAACGTGTTCAGAGTCATTTGCGTGGCGGGCTCACCAATAGACTGC 5021 Query 377554 GCTGCAATAACGCCAACCATTTCTCCAGGATTGAC 377588 ||||| | |||||| |||||||| ||||| |||| Sbjct 5022 GCTGCCAGAACGCCGACCATTTCACCAGGGCTGAC 5056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515213746671482