Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq315 232 7e-56 seq26 93.3 5e-14 seq60 89.7 6e-13 >seq315 Length=31375 Score = 232 bits (256), Expect = 7e-56 Identities = 347/488 (71%), Gaps = 6/488 (1%) Strand=Plus/Minus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || || |||||| | || || || |||||||||||||| || |||| |||| | Sbjct 25809 TTCACCCACGCCTCACCTACACTCTTCAACGCTGGTACCCCCCAATGTCAGCTGTCTTCC 25750 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 || ||||| || | |||||||| ||| || ||||| |||||||| || |||||| Sbjct 25749 TGTTTCCTAGTCGACATGAAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGACC 25690 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTG 53450 |||||| ||||||||| | | ||||| ||||| | || || | || |||||| Sbjct 25689 TGTGCCATGATCTCCAAGATGGCTGGTGGAATCGGCTTGAACG--TCCACCGCATCCGTG 25632 Query 53451 CGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCC 53510 | | |||| | || || || ||||| || | || ||| | || ||||||| Sbjct 25631 CTACCGGCTCTTACATTGCCGGCACCAACGGTACATCCAACGGCATCATTCCCATGCTCC 25572 Query 53511 GCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGT 53570 |||||||||||||||| ||| | ||||| ||||||| ||| ||||| || | | Sbjct 25571 GCGTCTTCAACAACACTGCCAGATACGTTGACCAGGGCGGTAACAAGCGACCTGGTGCAT 25512 Query 53571 TCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGA 53630 | ||||||||||||||||| |||||||| ||| | | || ||||| || |||| || Sbjct 25511 TTGCCATCTACCTCGAGCCTTGGCACGCAGACGTGTTCGACTTTCTTGATTTGCGAAAGA 25452 Query 53631 ATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGAC 53689 | || ||| | ||||| | || ||| || ||||| || ||||||||||| || || Sbjct 25451 ACCACGGTAAGGAAGAAAACCG-TGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGAT 25393 Query 53690 CTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGC 53749 ||||||||| | || || ||| ||| ||| ||| ||| ||||| || ||||||||| Sbjct 25392 CTCTTCATGAAGCGCGTCGAAAAGAACGGGGATTGGACCCTCATGTGTCCCAACGAGTGC 25333 Query 53750 CCCGGCCT 53757 || ||||| Sbjct 25332 CCTGGCCT 25325 Score = 104 bits (114), Expect = 3e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 55744 GACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTA 55803 ||| || ||||||||| | ||| | | || | ||| || ||||| ||||| | Sbjct 24355 GACTGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCGCCGATCGCGGTGCCTT 24296 Query 55804 CATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAG 55863 ||||||||||||||||| || ||| | |||| || ||||| | ||| |||| | | Sbjct 24295 TATCGACCAGTCCCAGTCGCTCAACGTTCACATGAAGGATCCTACTATGGGCAAGATCAC 24236 Query 55864 CTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||| ||||||||| || |||||| ||| ||||||||||| |||||||| |||| || Sbjct 24235 CTCTATGCACTTTGCTGGCTGGAAGTTGGGTCTCAAGACGGGCATGTACTACTTGCGCAC 24176 >seq26 Length=159661 Score = 93.3 bits (102), Expect = 5e-14 Identities = 232/342 (68%), Gaps = 14/342 (4%) Strand=Plus/Plus Query 130871 GTCGTCCACTTTGCAGCGCAGTCATTTGTGGATCTGAGTTTCGAGCAGTCGTTCCAGTTT 130930 ||| | || ||||| |||||||| |||||| ||||||| | | |||| | ||| Sbjct 50191 GTCTTGCATTTTGCTGCGCAGTCTCATGTGGACTTGAGTTTTGGAAACTCGTACAGTTTT 50250 Query 130931 ACACGGGACAATGTGCTCGGAACTCATGTCCTACTCGAGACGGTTCGCAATTATGGCAAG 130990 || | | ||||||| || || || || | || |||| || | ||| | || | Sbjct 50251 ACCCACGCCAATGTGTATGGGACGCACGTTTTGCTGGAGA--GTGC-CAAGAA-GGTTCG 50306 Query 130991 ATTCAG-CGTTTCGTGCACGTGAGCACGGACGAGGTGTACGGTGAGGT---TGATGGTCA 131046 | |||| || ||| | ||||| ||||| ||||||||||| || || || | | | Sbjct 50307 AATCAGACGCTTCATACACGTATCTACGGATGAGGTGTACGGAGAAGTGAAGGAGGATGA 50366 Query 131047 CG-TGACGTGTGACGAGACGGCAGCA--TTAAACCCAATGAATCCCTACGCGGCAAGCAA 131103 || |||| || | ||| | ||||| || ||||| ||| || ||||| || ||||| Sbjct 50367 CGATGACTTG-GTCGAATC--CAGCATTTTGTCCCCAACGAACCCATACGCAGCGAGCAA 50423 Query 131104 AGCGGCTGCTGAGCTCTATGTCCGGGCGTACACCAAGTGCTACAACCTACCGTGCATCAT 131163 ||| || ||||| | ||||| | |||| |||| ||| ||| || || |||||| Sbjct 50424 AGCAGCGGCTGAAATGCTTGTCCAATCTTACAACAAGAGCTTCAAGCTCCCAACCATCAT 50483 Query 131164 TACACGCGGAAACAACGTGTTTGGGCCGAAGCAATACCCGGA 131205 | || | |||||||||| ||||||| | || || || || Sbjct 50484 TGTTCGAAGCAACAACGTGTATGGGCCGCACCAGTATCCCGA 50525 >seq60 Length=108863 Score = 89.7 bits (98), Expect = 6e-13 Identities = 196/294 (67%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || |||||| | || || | || || ||||| |||||||| || || | || || Sbjct 101671 CGGGTGAAGGTATAACGAGGACTAGCAGCATCGGAACCACCTGCGAGACGGGAACCGAAG 101730 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | || ||||| |||| |||| ||||||| || | |||||||| ||||| Sbjct 101731 TTACCGCTTGGCTCCAGGATATTGATATTGTTGGATCCAATAAAATTCTGTGCCAAGCCG 101790 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | |||||| ||||| || |||||||||||||| || |||||||| | || || Sbjct 101791 ATAATCGTCTGTTGCAGCGAGGCCTCACCGTGGTGATATGCAGTCTGCTCAGAGACATAA 101850 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || || | | | | ||||| | ||| | ||| || ||||| || || || | Sbjct 101851 CCAGCGAGTTCCACAACCTTTTTATCCTTGACCAGATTTCGCTTGAAGCAAGCATAGAGA 101910 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319 ||||| ||||| |||||||| ||||| | ||| || || |||||| || Sbjct 101911 ACCTTTCGCTGACCAGGTTTCAAGCCGTCAATGACGGACGGGATGGAACGCATG 101964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547201676621200