Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq6 100 3e-16 >seq6 Length=213420 Score = 100 bits (110), Expect = 3e-16 Identities = 204/298 (68%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 6728 ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGG 6787 ||||||||||| || ||||| || || | ||||| || | |||||| | | Sbjct 168911 ACGTAGAATTGCGCGAATACATGGCAGGGCGGCAAGGCCATGAGGTGTAGATCCCGTGCG 168970 Query 6788 TTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACG 6847 |||||||| | ||| | ||||| ||||| | || || ||| | |||| ||||| Sbjct 168971 TTCCACGCACTCATGATGATCCGCCTGTCGTACGGCTTGTTCTTGATCTTGTCAATCACA 169030 Query 6848 TACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCG 6905 | | || |||||||| |||||| || | ||||||| ||| || | || ||||| | Sbjct 169031 T-CGGCGAGCTGGTCGACTCCCTTGCCGGTGTAGTCCGTCTTGGCATCGACG-TACTCTG 169088 Query 6906 CCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATG 6965 | |||||||| | ||| ||||| ||||| || || |||| ||||| | || || || Sbjct 169089 CGCCAAAGTGCCGCCATTGGAAGCCGTACACGGGTCCCAGATCGCCTACTTCACGGTGTG 169148 Query 6966 GGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 || ||| | ||||| || || || || || || | ||||||| || || || || Sbjct 169149 CGAGACCCAGATTGTCGAGGAACTCGCGGGATCCATTGCCGTCCCATATTTTGACGCC 169206 Score = 100 bits (110), Expect = 3e-16 Identities = 204/298 (68%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || || || || ||||||| | || || || || || || ||||| | ||| || || Sbjct 169206 GGCGTCAAAATATGGGACGGCAATGGATCCCGCGAGTTCCTCGACAATCTGGGTCTCGCA 169147 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 || || | ||||| |||| || || ||||| ||||| ||| | |||||||| || Sbjct 169146 CACCGTGAAGTAGGCGATCTGGGACCCGTGTACGGCTTCCAATGGCGGCACTTTGGCGCA 169087 Query 34442 GAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACG 34499 ||||| || | || ||| ||||||| | || |||||| |||||||| || | | | Sbjct 169086 GAGTA-CGTCGATGCCAAGACGGACTACACCGGCAAGGGAGTCGACCAGCTCGCCG-ATG 169029 Query 34500 TGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACC 34559 |||| |||| | ||| || || | ||||| ||||| | ||| | ||||||||| Sbjct 169028 TGATTGACAAGATCAAGAACAAGCCGTACGACAGGCGGATCATCATGAGTGCGTGGAACG 168969 Query 34560 CGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT 34617 | |||||| | || ||||| | || || ||||| || ||||||||||| Sbjct 168968 CACGGGATCTACACCTCATGGCCTTGCCGCCCTGCCATGTATTCGCGCAATTCTACGT 168911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448250666731680