Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 3e-14 >seq13 Length=187677 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || || | ||||| || ||| || | || |||||| | Sbjct 68192 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTTCT 68251 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| |||||| || || || || || || | || || | Sbjct 68252 GATACCATCGACAAT--GTCAAATCCAAGATTCAGGATAAGGAGGGAATCCCTCCCGACC 68309 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | |||||||||||||| || |||| |||| |||| || ||| |||| Sbjct 68310 AGCAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACACTGAGCGACTACA 68369 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || |||||||||||| | || | ||| ||||||| || Sbjct 68370 ACATCCAGAAGGAAAGCACTTTGCATCTCGTGCTTCGTCTGCGTGGTGG 68418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355853318169138