Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq13 159 8e-34 seq104 140 8e-28 seq54 127 5e-24 >seq13 Length=187677 Score = 159 bits (176), Expect = 8e-34 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| | || ||||| || || || || | |||||| |||| ||||||| Sbjct 68184 CGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTT 68125 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| ||||| ||||| ||||| || ||||| || ||||| ||| Sbjct 68124 CGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCT 68065 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||| ||||| ||| ||| ||||| || || || | ||| || || || Sbjct 68064 TCCTTGTCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACTTCCAAT 68005 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| |||||||| || | ||| | ||||| Sbjct 68004 GTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 67964 Score = 149 bits (164), Expect = 1e-30 Identities = 161/212 (76%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| ||||||||||| || |||| |||||| |||| | || | |||||| Sbjct 67947 AGTACGAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGACCATCT 67888 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| | ||| || || || || |||||||||||||| || Sbjct 67887 TCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTCCTTATCC 67828 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || ||| ||||||||||| |||| || || || | ||||| ||| Sbjct 67827 TGAATCTTCGATTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTC 67768 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | ||| |||||| Sbjct 67767 TTTCCAGTCAAAGTCTTGA-CAACTGTTGCAT 67737 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || | |||| ||| || |||| ||||| ||| || || | || ||| Sbjct 68403 AGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGGCCGTCT 68344 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || || ||||||||||| |||||||| || || || ||||| || Sbjct 68343 TCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCCTTATCC 68284 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || ||| |||||||| || || | ||| || || || ||||| ||| Sbjct 68283 TGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCGACTTCCAAGGTGATAGTC 68224 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | || | |||||| Sbjct 68223 TTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 68192 Score = 111 bits (122), Expect = 4e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || ||||| || || || || || |||| ||||| || | | ||| Sbjct 67655 CGAAGGCGAAGAACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTG 67596 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || ||||| || || || || Sbjct 67595 CGGCCGTCCTCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCAGGGGGGATTCCC 67536 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| ||| ||| || ||||| || || | || || || | Sbjct 67535 TCCTTGTCCTGAATCTTCGACTTGACATTGTCAATGGTATCAGACGACTCGACCTCGAGA 67476 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || || | ||| | |||||| Sbjct 67475 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 67435 >seq104 Length=76965 Score = 140 bits (154), Expect = 8e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| || ||| || || |||| ||||| ||| || || Sbjct 66896 ACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGT 66837 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||| |||||||||||||| ||||| || ||||| || Sbjct 66836 ACGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCC 66777 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | ||||| || | Sbjct 66776 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAG 66717 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| ||||| | ||||| | ||| | ||||| || Sbjct 66716 GGTGATTGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 66672 >seq54 Length=115083 Score = 127 bits (140), Expect = 5e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 ||||| |||| || |||| || || || |||||||| ||||||||||| | ||| || Sbjct 30715 TTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAATCGCTGC 30774 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 ||||| || ||||| || |||||||||||||| || ||| ||| ||||| ||||| Sbjct 30775 TGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCGATCGTGTCC 30834 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||| || || || | ||||| ||||||||||||| ||| || | ||| Sbjct 30835 GAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 30884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192499205133236