Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq521 89.7 4e-13 >seq521 Length=16305 Score = 89.7 bits (98), Expect = 4e-13 Identities = 170/250 (68%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905 ||||||| || ||||| || || ||||||||||| || ||||| | ||| || | | Sbjct 13307 TTTCAGAGTGAATATTCTCCATCATGATCTGAAATCCATAGAAGCAACGAGCCTCCGGAA 13248 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 | ||||| ||| | || | || | | |||||| || || || |||||| || | Sbjct 13247 CCTGAACCTCGCCGCTGAAACGCTCAAGCAGGTTTTCATTGACAATGCCGTCAGAAGCAG 13188 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTA---CTGTTCGTCAGGCTTAAGTTTTTTCC 5022 |||| || ||||||| || || || ||||| || ||||| | | | || |||| Sbjct 13187 CAAAGAATGCCAAAATGTGTGAGATGAAGTATTTCTCGTCGTCGCTCAGACGGTTGTTCC 13128 Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082 | | | |||| || || | | ||| | || || | ||||| || || ||||| || | Sbjct 13127 AATCGTGCAAGTCCTTGGACAGATCGATCTCCTCGGCCGTCCAGAAAGAGGCTTCGGCCT 13068 Query 5083 TTTTGTACAT 5092 | |||||||| Sbjct 13067 TCTTGTACAT 13058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427038701427302