Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq315 199 6e-46 >seq315 Length=31375 Score = 199 bits (220), Expect = 6e-46 Identities = 960/1516 (63%), Gaps = 28/1516 (2%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || ||||| |||| ||| || | || |||||| || || ||||| || | | Sbjct 24494 TGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCAC 24553 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 |||||||| |||| |||||| | || || || || ||||| || || | || || Sbjct 24554 TCATTGTTACCCAGAATTTGCGAGGTCGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAG 24613 Query 75842 TTTCTGAGACCATGTGTTC--TGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899 || | | ||| ||| || |||| | || || |||| | ||| ||||| | || | Sbjct 24614 TTGCGAATACC--GTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCATAACTCAG 24671 Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAG-CATATGATCCATTA 75958 | || |||| ||| | ||| |||| ||||| || || | || | || || || Sbjct 24672 AAGGCTTGACATTCCACATGTCGAATTGAAGAATACC-TTCCGAGGCGGGAGAGCCCTTG 24730 Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAA 76018 | || ||| | || | || || || || || | || | ||| ||| Sbjct 24731 AAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTCAGTGCAGCGTGG 24790 Query 76019 TAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAA 76078 || || || ||||| |||| ||| || || || | || || || || || || Sbjct 24791 TAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATG 24850 Query 76079 TGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTC 76138 | | | || ||| || || || || |||||||| |||| ||| || |||| ||||| | Sbjct 24851 CGCAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGC 24910 Query 76139 TTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGA 76198 | ||| | ||| || ||| ||||||| || | ||| || || || ||||| Sbjct 24911 ATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGG 24970 Query 76199 TTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATC 76258 || | ||| || |||| | || || | || || |||| || | || ||| | Sbjct 24971 TTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGAAAGTCGTAGCGGCCTTCTTTG 25030 Query 76259 ------ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCA 76312 || || | || || | ||| || | || ||||| || ||||||| || Sbjct 25031 TAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGG- 25089 Query 76313 TTGGCA---TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTT 76369 |||| || | || ||||||||||| || || | || ||||| || || Sbjct 25090 --GGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTC 25147 Query 76370 TGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCA 76429 | |||||||||||| |||| || | ||||| || || | ||| || | || ||||| Sbjct 25148 TTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCG 25207 Query 76430 ATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATC-- 76487 |||| || |||| || || | ||||| | ||| | | |||| ||| | Sbjct 25208 GTCTGGGACTCGAGGATCGAGTACCAGA-GCTTCTGGGCACGA--ATAGTCTTGCGGCCA 25264 Query 76488 -GCTTCTCTCTTTCATATTGT--GTATATAACCGTTCAAATTCATCTCCCCAAACATCAT 76544 | ||| | ||||| | | ||| | | || |||||||| || || | |||| Sbjct 25265 CGGCCCTCACGCTCATACTTTTCGTAGAGAGCC--TCAAATTCCTCGCCATAGCAATCAG 25322 Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604 ||| ||||| || || || |||||||| | | ||| || || | | | || || | Sbjct 25323 CCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCT 25382 Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCAT 76664 |||| |||||||| || ||||| ||||||| || || || || | | |||||| | Sbjct 25383 TCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCT 25442 Query 76665 TTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGAT 76724 | || |||||| | ||| || || || | | || | ||||| || || || | Sbjct 25443 TACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGT 25502 Query 76725 ATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTAT 76784 | || || | |||| ||||| || ||||| ||||| || | |||||||||||||| | Sbjct 25503 AGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGT 25562 Query 76785 TATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAAC 76844 | | || | | ||| ||||| |||||||| |||||||| || || || | ||| ||| Sbjct 25563 TGAAGACGCGGAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAG 25622 Query 76845 TTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTA 76904 || ||||| || | | ||| ||||| || ||||| || ||||| | Sbjct 25623 AGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCA 25682 Query 76905 GAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAA 76964 |||||| || | ||||| ||||| || || || || || ||| |||||| | | Sbjct 25683 TGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTA 25742 Query 76965 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCAT 77024 | |||||| ||||| ||| || || || || || || | |||||| || || | Sbjct 25743 GGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGT 25802 Query 77025 GAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATT 77084 | ||||| || || | || | ||| || || | ||| || || | | Sbjct 25803 GGGTGAAAAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATGTTGTCTC 25862 Query 77085 GATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTAT 77144 ||| || || || || ||||| | ||| ||||| || || || ||| |||| | Sbjct 25863 CCCAAATACCGACCGCAACGCGCATAATCATGTGCTGGGGCCGCTCGACAATCTTGCCGT 25922 Query 77145 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 77204 | | ||| | | |||||| | |||| ||| || || ||||| || | || |||| Sbjct 25923 TGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAGT 25982 Query 77205 CTCTTTCGTAAATAAT 77220 |||| ||||| | ||| Sbjct 25983 CTCTGTCGTAGACAAT 25998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712915738942080