Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq13 122 2e-22 seq104 91.5 3e-13 >seq13 Length=187677 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| ||||||||||| || || || ||||| |||| ||||||| ||||| Sbjct 68175 AGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCC 68116 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||||||||| | | || |||||||| ||| Sbjct 68115 TCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCT 68056 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| | || | | || ||| || ||||| | |||||||| Sbjct 68055 TGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACTTCCAATGTAATAGTC 67996 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| ||||||| |||||| Sbjct 67995 TTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 67964 Score = 114 bits (126), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| || ||||| || ||||||||||| || | | ||| | || || Sbjct 67646 AGAACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCGTCC 67587 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || |||||||| || | ||||||||| | | |||||| ||||| | Sbjct 67586 TCAAGCTGCTTT--CCAGCGAAGATCAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGT 67529 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | ||||| || |||||| | || | | | || || ||| || || ||||| || | Sbjct 67528 CCTGAATCTTCGACTTGACATTGTCAATGGTATCAGACGACTCGACCTCGAGAGTGATGG 67469 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| ||||| ||||||| ||||| Sbjct 67468 TCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 67435 >seq104 Length=76965 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || ||||||||||| ||| | || | ||||| || || || || || || Sbjct 66866 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGGCCATCCTCGAGCTGCTTACCAGCAAA 66807 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 |||||| | |||||||||| | || || ||||| || || || || |||||| | Sbjct 66806 GATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 66747 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | | |||| ||| ||| || ||||| || || || || |||||||| || || || Sbjct 66746 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGAC 66687 Query 152093 GAAGACCTGCATTTTACC 152110 ||| | |||||| || || Sbjct 66686 GAAAATCTGCATCTTGCC 66669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153789843709074