Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq13 172 1e-37 seq104 168 1e-36 seq54 138 2e-27 seq521 89.7 1e-12 >seq13 Length=187677 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| || ||||| || |||||||| || |||||||||||||| Sbjct 68419 ACCACCACGCAGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCT 68360 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| || || || || || |||||||| || | ||||| ||||| || Sbjct 68359 CAGTGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGG 68300 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| || || ||||| | ||| || | ||||| || || |||| |||||| Sbjct 68299 GATTCCCTCCTTATCCTGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCGAC 68240 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||||| ||||| || ||||| ||||| || || || ||||| Sbjct 68239 TTCCAAGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 68192 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| || || |||| ||| | || || || || || |||||||| | Sbjct 68191 ACCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGA 68132 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || ||||||||||| || || || || |||||||| | || || |||||| || Sbjct 68131 CAAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGG 68072 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||||||||| ||||| | ||||| ||||||| || ||||||| |||||| Sbjct 68071 AATGCCTTCCTTGTCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGAC 68012 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || || ||||| || ||||||||||| ||||| |||||||| Sbjct 68011 TTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 67964 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || |||||||| || || || | || || || |||||||||||||||| | Sbjct 67661 CCACCTCGAAGGCGAAGAACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAA 67602 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || || || ||||||| ||| || |||||| || Sbjct 67601 AGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCAGGGGGG 67542 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| | || || | || || || || || | ||||| Sbjct 67541 ATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATGGTATCAGACGACTCGACC 67482 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || || | ||||| ||||| || ||||| Sbjct 67481 TCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 67435 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| ||||| || || | ||| ||| || ||||| |||||||| | Sbjct 67963 ACCACCACGGAGGCGGAGTACGAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGA 67904 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| || || || || || || |||||||| || || || ||| || Sbjct 67903 GAGGGTACGACCATCTTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGG 67844 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| || || ||||| | ||| || | ||||| ||||| || | ||||| Sbjct 67843 AATACCTTCCTTATCCTGAATCTTCGATTTGACATTGTCGATGGTGTCGGAGGACTCGAC 67784 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| ||||| || ||||||||||| || Sbjct 67783 CTCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTGAC 67748 >seq104 Length=76965 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || |||| || | ||||| || || |||||||||||||| Sbjct 66902 ACCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 66843 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || |||||||| | ||||| ||||| || Sbjct 66842 CAGGGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGG 66783 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || || | ||||| ||||| |||| || || Sbjct 66782 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 66723 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||| ||||| ||||| | || || ||||| |||||||| || Sbjct 66722 CTCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 66672 >seq54 Length=115083 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || || ||||||||||| | || || || || ||||| || || || || || |||||| Sbjct 30706 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 30765 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || |||||| ||||| ||||||||||||||||| || | || || | ||| Sbjct 30766 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 30825 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| || || ||||| ||||| ||||||| |||||| ||||| Sbjct 30826 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 30884 >seq521 Length=16305 Score = 89.7 bits (98), Expect = 1e-12 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 230229 GGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTG 230288 |||||||| || || ||| ||||||||| ||||| || || ||||| | || || Sbjct 13781 GGCATGAACGCCACACTAATGAAGCAATATATTGAATTTGTCGCCGATCGCCTATTGGTT 13840 Query 230289 GCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATT 230348 || || || |||| || || || || || |||||||||| ||| |||||| |||| Sbjct 13841 GCTCTTGGTAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATT 13900 Query 230349 TCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAA 230400 || | || || || ||||||||||| ||||| || | || ||||||| Sbjct 13901 TCCTTGGGTGGTAAGACAAACTTCTTCGAGAAGCGAGTTGGAGAATATCAAA 13952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046711116641476