Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq104 150 4e-31 seq13 149 2e-30 >seq104 Length=76965 Score = 150 bits (166), Expect = 4e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||| || || || |||||||| |||||||| || ||| Sbjct 66678 CAGATTTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCTTCCGAC 66737 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || || || |||||||||||| Sbjct 66738 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAA 66797 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || || || |||||||| ||||| | || || ||| || ||| || Sbjct 66798 CGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACCCTGAGCGACTACAACATC 66857 Query 178104 CAAAAAGA 178111 || || || Sbjct 66858 CAGAAGGA 66865 >seq13 Length=187677 Score = 149 bits (164), Expect = 2e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || ||||| |||||||| || || || Sbjct 67438 CAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCTGAT 67497 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| || |||||||| || |||||||| Sbjct 67498 ACCATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATCCCCCCTGACCAGCAG 67557 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| ||||| || || || | |||||| | || || ||| || Sbjct 67558 CGTCTGATCTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACTCTTTCTGACTACAACATC 67617 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || ||||| || || || ||| Sbjct 67618 CAGAAGGAGTCAACCCTTCACCTCGTT 67644 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || | || ||||| || |||||| | || || ||| || || Sbjct 68195 CAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTTCTGAT 68254 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| ||||||||||| || || ||||||||||| ||||||||| Sbjct 68255 ACCATCGACAATGTCAAATCCAAGATTCAGGATAAGGAGGGAATCCCTCCCGACCAGCAA 68314 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||| || |||||||| ||||| ||||| || | || || ||| || ||| || Sbjct 68315 CGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACACTGAGCGACTACAACATC 68374 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||| || ||||||| || Sbjct 68375 CAGAAGGAAAGCACTTTGCATCTCGT 68400 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || ||| | || ||||| || |||||||| ||||| || ||| ||||||||||| Sbjct 67748 GTCAAGACTTTGACTGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGAC 67807 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || |||||| ||||||||||| || ||||| || ||||| || ||||| ||| | ||| Sbjct 67808 AATGTCAAATCGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAGCAGCGATTGATC 67867 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 ||||| || || ||||| |||||||| | || || |||| || || |||| || ||| Sbjct 67868 TTCGCTGGTAAGCAGCTGGAAGATGGTCGTACCCTCTCCGACTACAATATCCAGAAGGAA 67927 Query 178113 TCAACACTGCATCTTGT 178129 || || || || || || Sbjct 67928 TCCACTCTTCACCTCGT 67944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203698904644236