Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1 102 2e-16 seq159 84.2 5e-11 >seq1 Length=456006 Score = 102 bits (112), Expect = 2e-16 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511 ||||||||||| ||| ||| || || || ||||| || ||||| || | || ||| Sbjct 315535 GGCATGAACGCCACACTAATGAAGCAATATATTGAATTTGTCGCCGATCGTCTATTGGTT 315594 Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571 ||||||||| |||| || || ||||| | |||||||| | || |||||| |||| Sbjct 315595 GCACTTGGTAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATT 315654 Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631 || | || ||||| ||||||||||| ||||| || | || ||||| | | |||| Sbjct 315655 TCCTTGGGTGGCAAGACAAACTTCTTCGAGAAGCGAGTTGGAGAATATCAAAAGGCTGGC 315714 Query 230632 GTGATG 230637 || ||| Sbjct 315715 GTTATG 315720 >seq159 Length=74787 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 318996 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 319055 ||| |||||| |||||| ||||| |||| |||||||| || ||| | ||||| || Sbjct 39989 GTCGTCACCGTTGGCATATCGCCACTGGAGGTACTGGTTCGGCGTCTTCTCAAGGTGCAT 40048 Query 319056 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 319115 ||| | ||| | | ||| ||||| | |||| | | |||| || ||||||||| Sbjct 40049 CTCCACGTGCTCCAGAGCGTGCTGCTTGATGTAACCGATGCGCAGGTTGGGATGCTTCTC 40108 Query 319116 AACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCC 319175 || | || |||||| ||| || ||||||| ||| ||||||||| || || Sbjct 40109 GACTTTGCCTGTGGTGGGGATGCTTTCACCGGTGAGCAGCTTGATGAGGGTGGACTTGCC 40168 Query 319176 CGCACCGTT 319184 ||||||||| Sbjct 40169 CGCACCGTT 40177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057811571559710