Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 >seq1 Length=456006 Score = 131 bits (144), Expect = 2e-25 Identities = 321/480 (67%), Gaps = 10/480 (2%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| || || | ||| || || ||||| ||||| || ||||| | | || || |||| Sbjct 315706 TTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTCT 315647 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||||||||| || || || | | | ||| || || || ||| | | | || Sbjct 315646 CCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAAGTGCAACCAATA 315587 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 | ||| || |||||||| |||||||| ||||| | | |||||| |||| ||| Sbjct 315586 GACGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATGCCTAGGAGA- 315528 Query 16854 GTAC-CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 | || ||| ||||| || |||||||| |||||| || |||| || || | |||||| Sbjct 315527 GCACACGGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGATAATA 315468 Query 16913 --CTAGC-AACTCG-TTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGC 16968 || | || | | || || | ||||| |||||||| || ||||||||| Sbjct 315467 TCCTGGATAATTTGCTTGCTGGCTCGGTGC----TTAAGATGCGAGTGCAACAGACATGC 315412 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 ||||| || || ||||| || | | ||||||||||||||| || || | ||||| Sbjct 315411 AAAATCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGGCCGGG 315352 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 |||| || || ||||| | ||| || |||| || || | || ||||| || || Sbjct 315351 CATCAGACCACGCTTCTTGAGCCAGAAAATCGACGCAAAGGCACCGCTGAAGAAGATGCC 315292 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCA 17148 ||| || | || || || | || || | |||| | | | || |||| ||||||| Sbjct 315291 CTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGGAATCCTTGTCCTGAATCCA 315232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517539667633560