Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 >seq1 Length=456006 Score = 120 bits (132), Expect = 3e-22 Identities = 195/280 (70%), Gaps = 3/280 (1%) Strand=Plus/Minus Query 16479 TATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCAT 16538 |||| ||||| | | ||| |||| ||||| || ||||| || ||||| ||||||| Sbjct 315084 TATCGATCAGGAGAGAGTATGTTTCAGAGTGAATATTCTCCATCATGATCTGGAATCCAT 315025 Query 16539 AGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCAT 16598 ||||||| |||||||||| | || || || || || || || || ||| |||| Sbjct 315024 AGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCAAGCAAGTTTTCAT 314965 Query 16599 TCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGT 16658 | || || |||||| |||||||| || ||||| ||||| || || ||||| |||| Sbjct 314964 TGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAGATAAAGTATTTCTCGT 314905 Query 16659 CAGATGTAAGA---ATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCG 16715 | | ||| | | |||||| | || || ||||| | ||| | ||||| | || Sbjct 314904 CGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCCTTGGACAGATCGATCTCTTCGGCCG 314845 Query 16716 TCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 |||| || || | ||||| |||||||||| |||||| Sbjct 314844 TCCAGAAAGAGGCTTCGGCCTTCTTATACATTTGCCAAAT 314805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511408537912440