Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq92 118 1e-21 seq181 116 4e-21 seq47 102 9e-17 >seq92 Length=104316 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||||| |||| ||||||||||| || || ||||| || ||| || || | Sbjct 34752 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 34811 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||||||||| || || ||||| |||||||| | || | || ||||||| Sbjct 34812 TCTTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTG 34871 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || |||| ||| | | | |||||| || ||||| || | ||||| Sbjct 34872 TCCTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 34930 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || ||||| || || || || || || ||||| || Sbjct 34931 CGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 34969 >seq181 Length=64741 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| |||||||||| ||||| || |||| || |||||||| |||||||| Sbjct 8148 CTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 8207 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||| | || | | |||||||||| ||| | || | |||| Sbjct 8208 GATTAGACGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCC-TGAATCTTCGACTTGACAT 8266 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || ||| || || |||| || ||||| ||||| || || ||||| | Sbjct 8267 TGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGA 8326 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 8327 CGAAGATTTGCAT 8339 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||||||| || |||||| ||||||||||| || | || ||| || | Sbjct 7595 ACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCC 7654 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || ||||||||||| || ||||||||||||||||| | || | || ||||| Sbjct 7655 ATCCTCGAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTT 7714 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 | | ||| | || | || | | | | ||| || ||||| || || | || | Sbjct 7715 AT-CTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAACTTCCAATGTAA 7773 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||| || | ||||| || ||||| ||||| Sbjct 7774 TAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 7810 >seq47 Length=141222 Score = 102 bits (112), Expect = 9e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| ||||| ||||| || | ||| || || |||| || |||||||| |||||||| | Sbjct 51571 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 51630 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | |||||||||||| | || | || ||||||||| |||||| |||| | Sbjct 51631 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 51690 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | |||||| || || || || | |||||||| |||||||| || ||||| || | Sbjct 51691 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGA 51750 Query 43174 A 43174 | Sbjct 51751 A 51751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571811045540760