Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 7e-11 >seq1 Length=456006 Score = 82.4 bits (90), Expect = 7e-11 Identities = 177/260 (68%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 16533 TTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATA 16592 |||| || |||||||||||||| ||||| || ||||| ||||| | ||| || | | Sbjct 315063 TTTCAGAGTGAATATTCTCCATCATGATCTGGAATCCATAGAAGCAACGAGCCTCCGGAA 315004 Query 16593 TTTGTACTTCAGAG-TAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCT 16651 || || || | | |||| | || |||||||| || || || || || ||| Sbjct 315003 CCTGAACCTCGCCGCTGAAACGCTCAAGC-AAGTTTTCATTGACAATGCCGTCAGAAGCA 314945 Query 16652 GCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGT--TATCTGA-AAGTTTTAAC 16708 ||||| || || | |||||| ||||| | ||| |||| | || | | | || | Sbjct 314944 GCAAAGAATGCCAAAATGTGTGAGATAAAGTATTTCTCGTCGTCGCTCAGACGGTTGTTC 314885 Query 16709 CAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCC 16768 || || || || || || | ||||| |||||| | ||||| ||||| || | ||| Sbjct 314884 CAATCGTGCAAGTCCTTGGACAGATCGATCTCTTCGGCCGTCCAGAAAGAGGCTTCGGCC 314825 Query 16769 TTTTTATACATTTTCCATAT 16788 || |||||||||| ||| || Sbjct 314824 TTCTTATACATTTGCCAAAT 314805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462506698456200