Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq56 127 4e-24 >seq56 Length=135535 Score = 127 bits (140), Expect = 4e-24 Identities = 429/665 (65%), Gaps = 15/665 (2%) Strand=Plus/Minus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 || ||| ||| || | ||||| || ||| || | || | | ||||| ||||| || Sbjct 119355 CTTGACTCCGCCATCGTCTACGACAGAGACTTCAACTATCAATACTTTGGCTTCAAGACT 119296 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 ||||||| ||| ||||| |||||| | | ||||||||||| || ||| |||||||||| Sbjct 119295 CTGGAGAGATCATATCTTCTCAAACTCAACGGCAAGATCGTCGAGCGACCTCAGCACATG 119236 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 | ||||| || || ||||| ||| || |||| || |||| | ||||| ||| Sbjct 119235 ATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGAACGCGTTTTGGAGACCTAC 119176 Query 248962 ACCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGT 249018 | ||| || | | || | || || ||| |||| || ||||||||||| ||| Sbjct 119175 CACCTCATGTCCAGCAAGCTCT---TCACCCACGCCTCACCTACACTCTTCAACGCTGGT 119119 Query 249019 ACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGAC 249078 ||| | | ||||||| || || || || | | |||| | |||||| | ||| Sbjct 119118 ACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTCGACATGAAGGACGACAGCATTGAC 119059 Query 249079 GGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGCGGGCGGAATC 249135 || || || ||||| || | |||| || | ||| || || | || || || ||| Sbjct 119058 GGTATCTACGACACTCTCA---AGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATC 119002 Query 249136 GGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTC 249195 || | |||| | |||||| || | || || ||||| || || || || Sbjct 119001 GGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCAACGGTACA 118942 Query 249196 AGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAG 249255 | || ||| | ||| | ||||| ||| | ||| ||||||| | | ||||| Sbjct 118941 TCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCCAGGTACGTTGACCAG 118882 Query 249256 GCCGG---GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATA 249312 | ||| ||| || | || ||||| || | || |||||||| || | Sbjct 118881 GGCGGCAATAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTTGGCACGCAGACGTG 118822 Query 249313 TTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTC 249372 || || || || || ||| ||||||| ||||||| || | | || || |||||| Sbjct 118821 TTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGAAAACCGTGCTCGCGACCTC 118762 Query 249373 TTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGG 249432 ||| | |||||| || | || | |||||| |||||| | |||| |||||| Sbjct 118761 TTCCTTGCTCTGTGGATCCCAGATCTTTTCATGAAGCGCGTCGAAAAGAACGGGGATTGG 118702 Query 249433 ACGCT 249437 || || Sbjct 118701 ACCCT 118697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073753784251456